SMTL ID : 3ggo.1 (1 other biounit)

Crystal structure of prephenate dehydrogenase from A. aeolicus with HPP and NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 29 residues within 4Å: Chain A: G.40, V.41, G.42, F.43, M.44, Y.64, D.65, I.66, N.67, S.70, S.101, S.102, P.103, V.104, R.105, T.106, I.110, Q.127, G.128, S.129, H.150, P.151, A.153, G.154, T.155, E.156, S.158, G.159, M.261 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:V.41, A:F.43, A:M.44, A:I.66, A:S.70, A:S.102, A:R.105, A:S.129, A:E.156, A:K.157, A:G.159 Water bridges: A:V.104, A:M.261 NAI.3: 29 residues within 4Å: Chain B: G.40, V.41, G.42, F.43, M.44, Y.64, D.65, I.66, N.67, S.70, S.101, S.102, P.103, V.104, T.106, I.110, Q.127, G.128, S.129, P.151, A.153, G.154, T.155, K.157, S.158, G.159, M.261, I.265 Ligands: ENO.2 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:V.41, B:V.41, B:F.43, B:M.44, B:I.66, B:S.70, B:S.102, B:V.104, B:S.129, B:T.155, B:T.155, B:K.157, B:G.159 Water bridges: B:G.42, B:G.45, B:N.67, B:S.70

1 x ENO: 3-(4-HYDROXY-PHENYL)PYRUVIC ACID(Non-covalent)

ENO.2: 15 residues within 4Å: Chain A: G.245, G.246, G.247 Chain B: S.129, H.150, P.151, A.153, G.154, T.155, E.156, H.220, R.253, I.254, W.262 Ligands: NAI.3 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.262 Hydrogen bonds: B:H.150 Water bridges: B:S.216, B:R.253, A:G.247, A:G.247 Salt bridges: B:R.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, W. et al., The Crystal Structure of Aquifex aeolicus Prephenate Dehydrogenase Reveals the Mode of Tyrosine Inhibition. J.Biol.Chem. (2009)

Release Date

2009-03-10

Peptides

Prephenate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Prephenate dehydrogenase

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