SMTL ID : 3ghn.1

Crystal structure of the exosite-containing fragment of human ADAMTS13 (form-2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.330, R.345, V.346, A.347, R.355 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.355 Water bridges: A:R.352

1 x FUC- BGC: beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose(Post Translational Modification)

FUC-BGC.2: 7 residues within 4Å: Chain A: R.114, S.115, C.116, C.154, K.156, F.161, Q.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.114, A:R.114, A:Q.164, A:Q.164

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: R.260, D.267, N.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.260 NAG.4: 1 residues within 4Å: Chain A: N.295 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akiyama, M. et al., Crystal structures of the non-catalytic domains of ADAMTS13 reveal multiple discontinuous exosites for von Willebrand factor. To be Published

Release Date

2009-10-27

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 13: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A disintegrin and metalloproteinase with thrombospondin motifs 13