SMTL ID : 3gi7.1

Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x UNL: UNKNOWN LIGAND

UNL.1: 6 residues within 4Å: Chain A: R.99, E.102 Chain B: W.66, E.102, R.103, Y.106 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.103, A:R.99 Water bridges: B:W.66, B:R.99, B:R.99, B:R.103, A:R.99, A:R.99 UNL.4: 6 residues within 4Å: Chain A: E.102, R.103, Y.106 Chain B: R.99, E.102 Chain D: E.105 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.102, A:R.103 Water bridges: A:W.66, A:E.102, A:R.103, A:Y.106, A:Y.106 UNL.8: 6 residues within 4Å: Chain C: R.99, E.102 Chain D: W.66, E.102, R.103, Y.106 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:E.102, D:W.66, D:R.103 Water bridges: C:R.99, C:R.99, D:R.99, D:R.103 UNL.11: 6 residues within 4Å: Chain B: E.105 Chain C: E.102, R.103, Y.106 Chain D: R.99, E.102 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:E.102, C:R.103, B:E.105 Water bridges: C:R.103, C:R.103, C:Y.106, C:Y.106

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.58 Chain B: K.75 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.58, B:K.75 Water bridges: B:K.75, B:K.75 SO4.3: 2 residues within 4Å: Chain A: S.67, R.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.67 Water bridges: A:S.67, A:R.70 Salt bridges: A:R.70 SO4.5: 5 residues within 4Å: Chain B: A.53, G.54, L.55, M.56, S.57 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.54, B:G.54, B:S.57 Water bridges: B:L.55, B:L.55 SO4.6: 2 residues within 4Å: Chain A: K.75 Chain B: R.58 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.75, B:R.58 SO4.7: 2 residues within 4Å: Chain B: S.67, R.70 3 PLIP interactions: 3 interactions with chain B Water bridges: B:E.31, B:R.70 Salt bridges: B:R.70 SO4.9: 2 residues within 4Å: Chain C: R.58 Chain D: K.75 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain D Salt bridges: C:R.58, D:K.75 Water bridges: D:K.75, D:K.75 SO4.10: 2 residues within 4Å: Chain C: S.67, R.70 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.67 Water bridges: C:E.31, C:S.67 Salt bridges: C:R.70 SO4.12: 5 residues within 4Å: Chain D: A.53, G.54, L.55, M.56, S.57 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.54, D:G.54, D:S.57 Water bridges: D:L.55, D:L.55 SO4.13: 2 residues within 4Å: Chain C: K.75 Chain D: R.58 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Salt bridges: C:K.75, D:R.58 SO4.14: 2 residues within 4Å: Chain D: S.67, R.70 3 PLIP interactions: 3 interactions with chain D Water bridges: D:E.31, D:R.70 Salt bridges: D:R.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of secreted protein of unknown function (DUF1311) (NP_742474.1) from Pseudomonas putida KT2440 at 1.85 A resolution. To be published

Release Date

2009-03-31

Peptides

Secreted protein of unknown function DUF1311: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Secreted protein of unknown function DUF1311