SMTL ID : 3git.6 (6 other biounits)

Crystal structure of a truncated acetyl-CoA synthase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.25, K.71 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.25, A:K.71 SO4.5: 3 residues within 4Å: Chain A: E.244, G.245, E.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.245, A:E.246 SO4.7: 5 residues within 4Å: Chain A: I.23, R.24, K.25, R.119 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.25 Salt bridges: A:R.119 SO4.8: 2 residues within 4Å: Chain A: R.44, Y.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.167 Salt bridges: A:R.44

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 11 residues within 4Å: Chain A: R.95, C.196, L.198, C.199, C.208, G.216, L.217, C.218, V.221, C.287 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.196, A:C.199, A:C.208, A:C.218

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: C.199, C.285, G.286, C.287 Ligands: SF4.2, H2S.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.199, A:C.285, A:C.287

1 x H2S: HYDROSULFURIC ACID(Non-covalent)

H2S.4: 6 residues within 4Å: Chain A: C.199, F.202, C.285, G.286, C.287 Ligands: ZN.3 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: S.22, I.23, W.108, W.117, R.119 Ligands: SO4.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.23, A:I.23 Water bridges: A:W.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Volbeda, A. et al., Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica. Biochemistry (2009)

Release Date

2009-10-06

Peptides

Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha

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