SMTL ID : 3gj3.1

Crystal structure of human RanGDP-Nup153ZnF2 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.29 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.29, H2O.9, H2O.9, H2O.9, H2O.9

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: D.23, G.24, G.25, T.26, G.27, K.28, T.29, T.30, E.75, N.127, K.128, D.130, I.131, S.155, A.156, K.157 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:D.23, A:G.25, A:T.26, A:G.27, A:K.28, A:T.29, A:T.30, A:T.30, A:E.75, A:E.75, A:N.127, A:K.128, A:A.156, A:K.157, A:K.157 Water bridges: A:T.29, A:K.128, A:K.128, A:K.128, A:K.157 Salt bridges: A:K.28, A:D.130 pi-Cation interactions: A:K.157

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: C.10, C.13, C.24, C.27 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.10, B:C.13, B:C.24, B:C.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Partridge, J.R. et al., Crystallographic and Biochemical Analysis of the Ran-binding Zinc Finger Domain. J.Mol.Biol. (2009)

Release Date

2009-08-04

Peptides

GTP-binding nuclear protein Ran: A
Nuclear pore complex protein Nup153: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTP-binding nuclear protein Ran

Nuclear pore complex protein Nup153

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