- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x LEU: LEUCINE(Non-covalent)
LEU.4: 14 residues within 4Å:- Chain A: N.21, A.22, G.24, L.25, G.26, N.27, Y.108, F.253, T.254, S.256, F.259, S.355, I.359
- Ligands: NA.2
11 PLIP interactions:10 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.108, A:F.253, A:F.259, A:I.359
- Hydrogen bonds: A:G.24, A:G.26, A:N.27, A:T.254, A:S.256, A:S.256, L.4
LEU.14: 14 residues within 4Å:- Chain B: N.21, A.22, G.24, L.25, G.26, N.27, Y.108, F.253, T.254, S.256, F.259, S.355, I.359
- Ligands: NA.12
12 PLIP interactions:11 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:Y.108, B:F.253, B:F.259, B:I.359
- Hydrogen bonds: B:G.24, B:G.26, B:N.27, B:Y.108, B:T.254, B:S.256, B:S.256, L.14
- 12 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.5: 6 residues within 4Å:- Chain A: L.53, P.445, R.446, I.447, Y.448, V.451
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.53, A:I.447, A:Y.448, A:Y.448, A:V.451
- Hydrogen bonds: A:R.446
- Water bridges: A:I.447
BOG.6: 5 residues within 4Å:- Chain A: I.120, L.166, F.167, I.170, I.174
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.120, A:F.167, A:F.167, A:I.174
- Water bridges: A:L.166, A:F.167
BOG.7: 11 residues within 4Å:- Chain A: K.163, P.164, S.165, L.166, Y.169, H.391, F.395
- Chain B: W.484, F.488, I.491
- Ligands: BOG.8
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.484, B:F.488, B:I.491
- Hydrogen bonds: A:P.164
BOG.8: 7 residues within 4Å:- Chain A: K.163, H.391, F.395
- Chain B: W.484, F.488
- Ligands: BOG.7, BOG.9
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:H.391, A:F.395, A:F.395, B:W.484, B:F.488, B:F.488
- Hydrogen bonds: A:K.163, A:K.163
BOG.9: 11 residues within 4Å:- Chain A: I.161, F.395
- Chain B: M.476, E.477, E.478, T.479, W.481, V.483, W.484, R.487
- Ligands: BOG.8
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.481, B:W.484, A:I.161
- Hydrogen bonds: B:E.477, B:T.479, B:T.479, B:R.487, B:R.487
BOG.10: 7 residues within 4Å:- Chain A: L.29, I.111, F.253, A.319, L.400, D.401, D.404
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.29, A:I.111, A:F.253, A:D.404
- Hydrogen bonds: A:D.401
BOG.15: 6 residues within 4Å:- Chain B: L.53, P.445, R.446, I.447, Y.448, V.451
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.53, B:I.447, B:Y.448, B:Y.448, B:V.451
- Hydrogen bonds: B:R.446
- Water bridges: B:I.447
BOG.16: 5 residues within 4Å:- Chain B: I.120, L.166, F.167, I.170, I.174
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.120, B:F.167, B:F.167, B:I.174
- Water bridges: B:L.166, B:F.167
BOG.17: 11 residues within 4Å:- Chain A: W.484, F.488, I.491
- Chain B: K.163, P.164, S.165, L.166, Y.169, H.391, F.395
- Ligands: BOG.18
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:W.484, A:F.488, A:I.491
- Hydrogen bonds: B:P.164
BOG.18: 7 residues within 4Å:- Chain A: W.484, F.488
- Chain B: K.163, H.391, F.395
- Ligands: BOG.17, BOG.19
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:H.391, B:F.395, B:F.395, A:W.484, A:F.488, A:F.488
- Hydrogen bonds: B:K.163, B:K.163
BOG.19: 11 residues within 4Å:- Chain A: M.476, E.477, E.478, T.479, W.481, V.483, W.484, R.487
- Chain B: I.161, F.395
- Ligands: BOG.18
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:W.481, A:W.484, B:I.161
- Hydrogen bonds: A:E.477, A:T.479, A:R.487, A:R.487
BOG.20: 7 residues within 4Å:- Chain B: L.29, I.111, F.253, A.319, L.400, D.401, D.404
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.29, B:I.111, B:F.253, B:D.404
- Hydrogen bonds: B:D.401
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Quick, M. et al., Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-04-28
- Peptides
- Transporter: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x LEU: LEUCINE(Non-covalent)
- 12 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Quick, M. et al., Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-04-28
- Peptides
- Transporter: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A - Membrane
-
We predict this structure to be a membrane protein.