SMTL ID : 3gjr.1 (1 other biounit)

Caspase-3 Binds Diverse P4 Residues in Peptides

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DZE: methyl (3S)-3-[(tert-butoxycarbonyl)amino]-4-oxopentanoate(Non-covalent)

DZE.1: 11 residues within 4Å: Chain A: R.36, S.92, H.93, G.94, Q.133, A.134, C.135 Chain B: Y.29, S.30, W.31, R.32 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.94, A:C.135, B:S.30, B:R.32 Salt bridges: A:R.36, A:H.93, B:R.32 Hydrophobic interactions: B:Y.29, B:W.31

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain B: W.31, N.33, W.39, E.73, S.74, F.75 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.33, B:E.73, B:F.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fang, B. et al., Caspase-3 binds diverse P4 residues in peptides as revealed by crystallography and structural modeling. Apoptosis (2009)

Release Date

2009-03-24

Peptides

Caspase-3 subunit p17: A
Caspase-3 subunit p12: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Caspase-3 subunit p17

Caspase-3 subunit p12

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