SMTL ID : 3gkh.1

NPC1(NTD)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: G.45, F.46, F.48, N.86, C.89, E.90, N.202 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.138, R.141, D.142, C.207, I.225 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.141, A:D.142 Water bridges: A:R.141, A:D.142

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: N.66, P.70, F.88, M.173 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.173 GOL.4: 5 residues within 4Å: Chain A: N.21, N.66, T.92, F.183 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.21, A:N.66 Water bridges: A:N.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kwon, H.J. et al., Structure of N-terminal domain of NPC1 reveals distinct subdomains for binding and transfer of cholesterol. Cell(Cambridge,Mass.) (2009)

Release Date

2009-07-14

Peptides

Niemann-Pick C1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Niemann-Pick C1 protein

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