SMTL ID : 3gkj.1

NPC1D(NTD):25hydroxycholesterol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: G.45, F.46, F.48, N.86, C.89, E.90, N.202 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.138, R.141, D.142, C.207, I.225 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.141, A:D.142 Water bridges: A:N.138, A:R.141, A:D.142

1 x HC3: 25-HYDROXYCHOLESTEROL(Non-covalent)

HC3.3: 19 residues within 4Å: Chain A: N.21, Q.59, T.62, L.63, N.66, L.69, P.70, F.88, L.91, T.92, L.156, Y.172, M.173, N.178, Q.180, A.181, P.182, F.183, I.185 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.63, A:L.63, A:N.66, A:P.70, A:F.88, A:F.88, A:L.91, A:L.156, A:Y.172, A:N.178, A:Q.180, A:Q.180, A:P.182, A:I.185 Hydrogen bonds: A:N.21, A:Q.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kwon, H.J. et al., Structure of N-terminal domain of NPC1 reveals distinct subdomains for binding and transfer of cholesterol. Cell(Cambridge,Mass.) (2009)

Release Date

2009-07-14

Peptides

Niemann-Pick C1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Niemann-Pick C1 protein

Related Entries With Identical Sequence