SMTL ID : 3gkn.2 (1 other biounit)

Insights into the Alkyl Peroxide Reduction Activity of Xanthomonas campestris Bacterioferritin Comigratory Protein from the Trapped Intermediate/Ligand Complex Structures

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x BIH: NAPHTHALENE-2,6-DISULFONIC ACID(Non-covalent)

BIH.1: 8 residues within 4Å: Chain A: L.22, S.23, K.71, G.91, F.92, A.93, F.94, P.95 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.95 Hydrogen bonds: A:S.23, A:F.92 Water bridges: A:L.96 Salt bridges: A:K.71

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: T.53, D.57, V.146, A.147, G.148, D.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.57, A:G.148, A:D.151 Water bridges: A:D.57

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: P.44, K.45, R.77, G.123, I.124 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.45, A:I.124 Water bridges: A:R.77, A:L.122 Salt bridges: A:K.45 SO4.4: 2 residues within 4Å: Chain A: P.44, R.126 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.126 Salt bridges: A:R.126 SO4.5: 4 residues within 4Å: Chain A: T.52, H.83, D.84, N.85 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.52, A:D.84, A:N.85, A:N.85 Salt bridges: A:H.83 SO4.6: 3 residues within 4Å: Chain A: D.6, A.140, R.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.6, A:A.140, A:R.142 Water bridges: A:D.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, S.-J. et al., Insights into the alkyl peroxide reduction pathway of Xanthomonas campestris bacterioferritin comigratory protein from the trapped intermediate-ligand complex structures. J.Mol.Biol. (2009)

Release Date

2009-06-16

Peptides

Bacterioferritin comigratory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bacterioferritin comigratory protein

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