SMTL ID : 3glj.1

A polymorph of carboxypeptidase B zymogen structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.161, E.164, H.289 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.161, A:E.164, A:E.164, A:H.289, H2O.1

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.279, S.280, I.282, K.283, G.355, I.356 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.279, A:K.283, A:G.355 Water bridges: A:K.283, A:K.357 GOL.3: 4 residues within 4Å: Chain A: H.99, Y.101, W.113, Q.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.99, A:Q.116 Water bridges: A:H.99, A:Q.116 GOL.4: 3 residues within 4Å: Chain A: S.119, E.120, P.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.120 GOL.5: 6 residues within 4Å: Chain A: L.124, I.125, S.126, K.143, G.145, P.147 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.126, A:S.126, A:K.143, A:G.145 Water bridges: A:K.143 GOL.6: 3 residues within 4Å: Chain A: Y.392, N.395, Y.396 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez, D. et al., Analysis of a new crystal form of procarboxypeptidase B: further insights into the catalytic mechanism. Biopolymers (2009)

Release Date

2009-10-20

Peptides

Carboxypeptidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase B