SMTL ID : 3gm5.1

Crystal structure of a putative methylmalonyl-coenzyme A epimerase from Thermoanaerobacter tengcongensis at 2.0 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 11 residues within 4Å: Chain A: Q.22, T.51, L.72, E.83, W.94, H.107, F.135, Y.140, Y.142, E.154, L.156 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.140, A:L.156 Hydrogen bonds: A:Q.22, A:Y.142, A:E.154, A:E.154 Water bridges: A:D.52, A:Y.140 Salt bridges: A:H.107 CIT.4: 11 residues within 4Å: Chain B: Q.22, T.51, L.72, E.83, W.94, H.107, F.135, Y.140, Y.142, E.154, L.156 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.140, B:L.156 Hydrogen bonds: B:Q.22, B:E.154, B:E.154 Water bridges: B:T.51, B:T.51, B:D.52 Salt bridges: B:H.107

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: D.16, M.17, R.18, V.111, N.158 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:M.17, A:R.18, A:N.158 Water bridges: A:R.18, A:R.18 Salt bridges: A:R.18 SO4.3: 4 residues within 4Å: Chain A: R.28, E.89, R.95, L.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.89 Water bridges: A:R.28, A:R.28, A:R.95 Salt bridges: A:R.28, A:R.95 SO4.5: 5 residues within 4Å: Chain B: D.16, M.17, R.18, V.111, N.158 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.16, B:M.17, B:R.18, B:N.158 Water bridges: B:R.18, B:R.18 Salt bridges: B:R.18 SO4.6: 4 residues within 4Å: Chain B: R.28, E.89, R.95, L.98 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.89, B:E.89 Water bridges: B:R.28, B:R.28, B:R.95 Salt bridges: B:R.28, B:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, L. et al., Crystal structure of a putative methylmalonyl-coenzyme a epimerase from Thermoanaerobacter tengcongensis at 2.0 A resolution. Proteins (2009)

Release Date

2009-09-22

Peptides

Lactoylglutathione lyase and related lyases: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lactoylglutathione lyase and related lyases