SMTL ID : 3gmd.2 (3 other biounits)

Structure-based design of 7-Azaindole-pyrrolidines as inhibitors of 11beta-Hydroxysteroid-Dehydrogenase type I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, T.67, M.68, N.94, H.95, I.96, R.113, I.143, S.144, S.145, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: 2M3.4 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.190 Hydrogen bonds: A:G.16, A:S.18, A:S.18, A:K.19, A:I.21, A:R.41, A:S.42, A:T.67, A:T.67, A:M.68, A:N.94, A:I.96, A:R.113, A:Y.122, A:K.162, A:I.193, A:T.195, A:T.195, A:T.197 Water bridges: A:G.22, A:S.42, A:T.197 Salt bridges: A:R.41 pi-Cation interactions: A:H.95 NDP.5: 30 residues within 4Å: Chain B: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, T.67, M.68, N.94, H.95, I.96, T.97, V.117, I.143, S.144, S.145, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: 2M3.7 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:L.190, B:I.193 Hydrogen bonds: B:S.18, B:S.18, B:K.19, B:K.19, B:I.21, B:R.41, B:S.42, B:T.67, B:T.67, B:M.68, B:N.94, B:I.96, B:K.162, B:I.193, B:I.193, B:T.195, B:T.195, B:T.197, B:T.197 Water bridges: B:S.18, B:G.22 Salt bridges: B:K.19, B:K.19, B:R.41

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.41, T.97, Q.98, R.113 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.98 Water bridges: A:R.113, A:R.113 Salt bridges: A:R.41, A:R.113 SO4.3: 6 residues within 4Å: Chain A: K.19, G.20, R.23, T.195, E.196, K.213 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.20, A:E.196 Water bridges: A:R.23, A:R.23, A:E.24 Salt bridges: A:R.23, A:K.213 SO4.6: 6 residues within 4Å: Chain B: K.19, G.20, R.23, T.195, E.196, K.213 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.20, B:E.196, B:E.196 Water bridges: B:R.23, B:R.23, B:T.197, B:K.213 Salt bridges: B:R.23, B:K.213

2 x 2M3: 2-methyl-3-{(3S)-1-[(1-pyridin-2-ylcyclopropyl)carbonyl]pyrrolidin-3-yl}-1H-pyrrolo[2,3-b]pyridine(Non-covalent)

2M3.4: 16 residues within 4Å: Chain A: T.99, L.101, S.145, L.146, A.147, Y.152, Y.158, L.190, G.191, L.192, T.197, A.198, A.201, V.202 Chain B: Y.259 Ligands: NDP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.99, A:L.101, A:L.146, A:Y.152, A:A.198, A:A.201, A:V.202 Hydrogen bonds: A:T.99, A:S.145, A:Y.158 Water bridges: A:T.99 pi-Stacking: A:Y.152 2M3.7: 18 residues within 4Å: Chain A: Y.259 Chain B: I.96, T.99, S.100, L.101, S.145, L.146, A.147, Y.152, Y.158, L.190, G.191, L.192, T.197, A.198, A.201, V.202 Ligands: NDP.5 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.99, B:L.101, B:L.146, B:Y.152, B:A.198, B:A.201, B:V.202 Hydrogen bonds: B:T.99, B:T.99, B:S.145, B:Y.158 Water bridges: B:Y.152 pi-Stacking: B:Y.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valeur, E. et al., Structure-based design of 7-azaindole-pyrrolidine amides as inhibitors of 11 beta-hydroxysteroid dehydrogenase type I. Bioorg.Med.Chem.Lett. (2012)

Release Date

2010-11-17

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Corticosteroid 11-beta-dehydrogenase isozyme 1

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