SMTL ID : 3gny.1 (1 other biounit)

Crystal structure of human alpha-defensin 1 (HNP1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-tetramer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: I.6, P.7, R.15, L.25, W.26, A.27 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.15, A:R.15 Water bridges: A:R.24, A:L.25 GOL.3: 6 residues within 4Å: Chain B: I.6, P.7, R.15, L.25, W.26, A.27 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.7, B:R.15, B:R.15 GOL.5: 6 residues within 4Å: Chain C: I.6, P.7, R.15, L.25, W.26, A.27 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.15, C:R.15 Water bridges: C:R.24, C:L.25 GOL.6: 6 residues within 4Å: Chain D: I.6, P.7, R.15, L.25, W.26, A.27 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:P.7, D:R.15, D:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, G. et al., Through the looking glass, mechanistic insights from enantiomeric human defensins. J.Biol.Chem. (2009)

Release Date

2009-07-28

Peptides

Neutrophil defensin 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Neutrophil defensin 1

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