SMTL ID : 3go5.1

Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: E.205, V.206 Ligand excluded by PLIP

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: K.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.252 EDO.3: 6 residues within 4Å: Chain A: L.134, A.135, Y.136, Y.161, R.162, L.192 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.163 EDO.4: 5 residues within 4Å: Chain A: W.74, Q.117, I.159, P.173 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.117 Water bridges: A:Q.117 EDO.5: 5 residues within 4Å: Chain A: R.186, Y.187, A.188, Q.194, L.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.187, A:A.188, A:Q.194 Water bridges: A:A.188, A:A.188, A:R.191 EDO.6: 6 residues within 4Å: Chain A: N.243, D.244, K.245, Q.277, D.278, Q.279 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.244, A:K.245 Water bridges: A:Q.279 EDO.7: 2 residues within 4Å: Chain A: F.9, V.11 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: P.173, E.174 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.9: 2 residues within 4Å: Chain A: A.253, T.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.254 EDO.10: 5 residues within 4Å: Chain A: M.2, N.3, T.4, N.5, D.27 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.4, A:N.5, A:D.27 EDO.11: 3 residues within 4Å: Chain A: L.143, Y.171, N.176 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsumoto, Y. et al., Structure of a virulence regulatory factor CvfB reveals a novel winged helix RNA binding module. Structure (2010)

Release Date

2009-04-07

Peptides

Multidomain protein with S1 RNA-binding domains: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Multidomain protein with S1 RNA-binding domains