SMTL ID : 3gon.1

Streptococcus pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and AMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x PMV: (3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID(Non-covalent)

PMV.1: 15 residues within 4Å: Chain A: K.9, Y.11, E.15, Y.16, I.18, L.19, G.103, G.146, S.147, S.213, V.217, G.292, A.293 Ligands: ANP.2, MG.3 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.11, A:Y.16, A:V.217, A:A.293 Hydrogen bonds: A:Y.16, A:S.147, A:S.213, A:A.293 Water bridges: A:K.9, A:Y.11, A:M.148, A:G.149, A:S.213, A:S.291, A:G.294, A:D.297, A:D.297 Salt bridges: A:K.9

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 17 residues within 4Å: Chain A: K.9, M.34, S.48, M.50, F.51, L.65, I.66, K.101, G.103, L.104, G.105, S.106, S.107, S.213, D.297 Ligands: PMV.1, MG.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:K.9, A:K.9, A:S.48, A:K.101, A:G.103, A:G.105, A:S.106, A:S.106, A:S.106, A:S.107, A:S.107, A:S.107, A:S.213, A:S.213 Water bridges: A:M.50, A:M.50, A:G.103, A:G.108, A:R.142, A:S.213, A:D.297 Salt bridges: A:K.101

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: K.101, S.213, D.297 Ligands: PMV.1, ANP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.297, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andreassi, J.L. et al., Structure of the ternary complex of phosphomevalonate kinase: the enzyme and its family. Biochemistry (2009)

Release Date

2009-07-21

Peptides

Phosphomevalonate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphomevalonate kinase