SMTL ID : 3gp4.2 (1 other biounit)

Crystal structure of putative MerR family transcriptional regulator from listeria monocytogenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Y.22, R.53, R.56, I.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.22, A:R.53, A:R.56 GOL.2: 7 residues within 4Å: Chain B: R.33, G.37, V.38, R.39 Chain D: D.67, A.70, L.71 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.33, B:G.37 Water bridges: B:R.39 GOL.5: 4 residues within 4Å: Chain C: Y.22, R.53, R.56, I.62 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.22, C:R.53, C:R.56 GOL.6: 7 residues within 4Å: Chain D: R.33, G.37, V.38, R.39 Chain F: D.67, A.70, L.71 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.33, D:G.37 Water bridges: D:R.39 GOL.9: 4 residues within 4Å: Chain E: Y.22, R.53, R.56, I.62 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.22, E:R.53, E:R.56 GOL.10: 7 residues within 4Å: Chain B: D.67, A.70, L.71 Chain F: R.33, G.37, V.38, R.39 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:R.33, F:G.37 Water bridges: F:R.39

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain B: S.2, K.40 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.40, B:K.40 Water bridges: B:S.2 NA.7: 2 residues within 4Å: Chain D: S.2, K.40 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.40, D:K.40 Water bridges: D:S.2 NA.11: 2 residues within 4Å: Chain F: S.2, K.40 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:K.40, F:K.40 Water bridges: F:S.2

3 x MED: D-METHIONINE(Non-covalent)

MED.4: 7 residues within 4Å: Chain A: K.110, Y.114, L.118 Chain B: R.47, W.48, Y.68, F.72 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.68, B:Y.68, A:Y.114 Salt bridges: A:K.110 MED.8: 7 residues within 4Å: Chain C: K.110, Y.114, L.118 Chain D: R.47, W.48, Y.68, F.72 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:Y.114, D:Y.68, D:Y.68 Salt bridges: C:K.110 MED.12: 7 residues within 4Å: Chain E: K.110, Y.114, L.118 Chain F: R.47, W.48, Y.68, F.72 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:Y.114, F:Y.68, F:Y.68 Salt bridges: E:K.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Structure of putative MerR family transcriptional regulator from Listeria monocytogenes. To be published

Release Date

2009-04-21

Peptides

Transcriptional regulator, MerR family: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Transcriptional regulator, MerR family

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