SMTL ID : 3gqc.4 (3 other biounits)

Structure of human Rev1-DNA-dNTP ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.1: 17 residues within 4Å: Chain A: R.28, D.94, M.95, D.96, C.97, F.98, F.99, A.180, S.181, Y.184, R.187, N.193, D.241, K.296 Chain B: C.12 Ligands: MG.2, MG.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.28, A:C.97, A:F.98, A:F.99, A:S.181, A:S.181, A:Y.184, A:Y.184, A:N.193 Salt bridges: A:R.187, A:R.187, A:K.296

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.94, M.95, D.241, K.296 Ligands: DCP.1, MG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.94, A:M.95, A:D.241 MG.3: 6 residues within 4Å: Chain A: D.94, D.241, E.242 Chain B: C.12 Ligands: DCP.1, MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.241, A:E.242 MG.4: 5 residues within 4Å: Chain A: T.118, S.119, E.178, Y.212 Chain C: A.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.178, A:Y.212 MG.5: 6 residues within 4Å: Chain A: T.318, N.319, L.320, P.321, V.323 Chain B: A.11 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.318, A:L.320, A:V.323, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swan, M.K. et al., Structure of the human Rev1-DNA-dNTP ternary complex. J.Mol.Biol. (2009)

Release Date

2009-05-19

Peptides

DNA repair protein REV1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

DNA repair protein REV1

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