SMTL ID : 3gs6.1

Vibrio Cholerea family 3 glycoside hydrolase (NagZ)in complex with N-butyryl-PUGNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NP6: [[(3R,4R,5S,6R)-3-(BUTANOYLAMINO)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-2-YLIDENE]AMINO] N-PHENYLCARBAMATE

NP6.1: 13 residues within 4Å: Chain A: I.30, F.32, D.62, F.114, A.126, I.127, R.130, K.160, H.161, H.165, M.204, D.243, M.246 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.126, A:I.127, A:M.246 Hydrogen bonds: A:R.130, A:R.130, A:K.160, A:H.161 Water bridges: A:D.243, A:D.243, A:D.243

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: V.153, Q.301, F.303, L.311 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.301 GOL.3: 7 residues within 4Å: Chain A: D.7, V.8, A.9, R.34, N.274, K.275, R.276 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.7, A:R.34, A:N.274, A:R.276 Water bridges: A:D.7, A:A.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balcewich, M.D. et al., Insight into a strategy for attenuating AmpC-mediated beta-lactam resistance: structural basis for selective inhibition of the glycoside hydrolase NagZ. Protein Sci. (2009)

Release Date

2009-06-30

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-hexosaminidase

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