- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x THG: (6S)-5,6,7,8-TETRAHYDROFOLATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.254, V.409, D.413
6 PLIP interactions:2 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.254, A:V.409, H2O.16, H2O.16, H2O.16, H2O.16
MG.5: 3 residues within 4Å:- Chain B: D.254, V.409, D.413
6 PLIP interactions:2 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.254, B:V.409, H2O.58, H2O.58, H2O.58, H2O.58
MG.8: 3 residues within 4Å:- Chain C: D.254, V.409, D.413
6 PLIP interactions:2 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.254, C:V.409, H2O.99, H2O.99, H2O.100, H2O.100
MG.11: 3 residues within 4Å:- Chain D: D.254, V.409, D.413
6 PLIP interactions:2 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:D.254, D:V.409, H2O.141, H2O.141, H2O.141, H2O.141
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.3: 34 residues within 4Å:- Chain A: G.8, G.10, I.11, V.12, D.32, Q.33, P.39, G.41, S.42, T.43, H.45, A.46, P.47, G.48, L.49, T.169, T.170, V.171, C.199, A.200, G.201, W.203, I.207, H.222, Y.224, Y.256, F.328, G.330, I.331, F.332, V.357, W.358, V.359, T.360
31 PLIP interactions:31 interactions with chain A- Hydrophobic interactions: A:P.47, A:Y.224, A:F.328, A:F.332
- Hydrogen bonds: A:V.12, A:Q.33, A:Q.33, A:G.41, A:S.42, A:S.42, A:T.43, A:T.43, A:G.48, A:L.49, A:L.49, A:V.171, A:V.171, A:G.201, A:Y.256, A:V.359, A:T.360
- Water bridges: A:G.10, A:G.10, A:P.39, A:G.40, A:G.40, A:F.202, A:F.202, A:V.357, A:T.360
- pi-Stacking: A:W.203
FAD.6: 34 residues within 4Å:- Chain B: G.8, G.10, I.11, V.12, D.32, Q.33, P.39, G.41, S.42, T.43, H.45, A.46, P.47, G.48, L.49, T.169, T.170, V.171, C.199, A.200, G.201, W.203, I.207, H.222, Y.224, Y.256, F.328, G.330, I.331, F.332, V.357, W.358, V.359, T.360
31 PLIP interactions:31 interactions with chain B- Hydrophobic interactions: B:P.47, B:Y.224, B:F.328, B:F.332
- Hydrogen bonds: B:V.12, B:Q.33, B:Q.33, B:G.41, B:S.42, B:S.42, B:T.43, B:T.43, B:G.48, B:L.49, B:L.49, B:V.171, B:V.171, B:G.201, B:Y.256, B:V.359, B:T.360
- Water bridges: B:G.10, B:G.10, B:P.39, B:G.40, B:G.40, B:F.202, B:F.202, B:V.357, B:T.360
- pi-Stacking: B:W.203
FAD.9: 34 residues within 4Å:- Chain C: G.8, G.10, I.11, V.12, D.32, Q.33, P.39, G.41, S.42, T.43, H.45, A.46, P.47, G.48, L.49, T.169, T.170, V.171, C.199, A.200, G.201, W.203, I.207, H.222, Y.224, Y.256, F.328, G.330, I.331, F.332, V.357, W.358, V.359, T.360
30 PLIP interactions:30 interactions with chain C- Hydrophobic interactions: C:P.47, C:Y.224, C:F.328, C:F.332
- Hydrogen bonds: C:V.12, C:Q.33, C:Q.33, C:G.41, C:S.42, C:S.42, C:T.43, C:T.43, C:G.48, C:L.49, C:L.49, C:V.171, C:V.171, C:G.201, C:V.359, C:T.360, C:T.360
- Water bridges: C:G.10, C:G.10, C:P.39, C:G.40, C:G.40, C:F.202, C:F.202, C:V.357
- pi-Stacking: C:W.203
FAD.12: 34 residues within 4Å:- Chain D: G.8, G.10, I.11, V.12, D.32, Q.33, P.39, G.41, S.42, T.43, H.45, A.46, P.47, G.48, L.49, T.169, T.170, V.171, C.199, A.200, G.201, W.203, I.207, H.222, Y.224, Y.256, F.328, G.330, I.331, F.332, V.357, W.358, V.359, T.360
30 PLIP interactions:30 interactions with chain D- Hydrophobic interactions: D:P.47, D:Y.224, D:F.328, D:F.332
- Hydrogen bonds: D:V.12, D:Q.33, D:Q.33, D:G.41, D:S.42, D:S.42, D:T.43, D:T.43, D:G.48, D:L.49, D:L.49, D:V.171, D:V.171, D:G.201, D:V.359, D:T.360, D:T.360
- Water bridges: D:G.10, D:G.10, D:P.39, D:G.40, D:G.40, D:F.202, D:F.202, D:V.357
- pi-Stacking: D:W.203
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tralau, T. et al., An internal reaction chamber in dimethylglycine oxidase provides efficient protection from exposure to toxic formaldehyde. J.Biol.Chem. (2009)
- Release Date
- 2009-04-14
- Peptides
- N,N-dimethylglycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x THG: (6S)-5,6,7,8-TETRAHYDROFOLATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tralau, T. et al., An internal reaction chamber in dimethylglycine oxidase provides efficient protection from exposure to toxic formaldehyde. J.Biol.Chem. (2009)
- Release Date
- 2009-04-14
- Peptides
- N,N-dimethylglycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A