SMTL ID : 3gt8.2 (1 other biounit)

Crystal structure of the inactive EGFR kinase domain in complex with AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 19 residues within 4Å: Chain A: L.26, G.27, S.28, G.29, A.30, F.31, V.34, A.51, K.53, Q.99, L.100, M.101, C.105, D.145, R.149, N.150, L.152, D.163 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.28, A:G.29, A:A.30, A:Q.99, A:M.101, A:C.105, A:R.149, A:R.149, A:D.163 Water bridges: A:L.26, A:S.28, A:F.31, A:G.32 Salt bridges: A:K.53 ANP.3: 18 residues within 4Å: Chain B: S.28, G.29, A.30, F.31, G.32, V.34, A.51, K.53, Q.99, L.100, M.101, C.105, D.145, R.149, N.150, L.152, D.163 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.30, B:Q.99, B:M.101, B:C.105, B:D.145, B:R.149, B:N.150 Water bridges: B:F.31, B:F.31 Salt bridges: B:K.53

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: R.149, N.150, D.163 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.163, H2O.1 MG.4: 4 residues within 4Å: Chain B: R.149, N.150, D.163 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jura, N. et al., Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment. Cell(Cambridge,Mass.) (2009)

Release Date

2009-07-21

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Epidermal growth factor receptor

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