SMTL ID : 3gtd.1

2.4 Angstrom crystal structure of fumarate hydratase from Rickettsia prowazekii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 9 residues within 4Å: Chain A: S.119, T.121, S.161, N.162 Chain B: M.342, K.345, N.347 Chain D: T.208, H.209 7 PLIP interactions: 2 interactions with chain B, 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: B:N.347, D:T.208, A:S.119, A:N.162 Salt bridges: B:K.345, D:H.209, D:H.209 MLI.3: 11 residues within 4Å: Chain A: G.338, S.339, M.342, K.345, N.347 Chain B: S.119, T.121, S.161, N.162 Chain C: T.208, H.209 8 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A, 3 interactions with chain C Hydrogen bonds: B:S.119, B:N.162, A:G.338, A:N.347, C:T.208 Salt bridges: A:K.345, C:H.209, C:H.209 MLI.4: 9 residues within 4Å: Chain B: T.208, H.209 Chain C: S.119, T.121, S.161, N.162 Chain D: M.342, K.345, N.347 8 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: B:T.208, C:S.119, C:T.121, C:N.162, D:N.347 Salt bridges: B:H.209, B:H.209, D:K.345 MLI.6: 11 residues within 4Å: Chain A: T.208, H.209 Chain C: G.338, S.339, M.342, K.345, N.347 Chain D: S.119, T.121, S.161, N.162 9 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A, 3 interactions with chain C Hydrogen bonds: D:S.119, D:N.162, A:T.208, C:G.338, C:N.347 Water bridges: D:T.117 Salt bridges: A:H.209, A:H.209, C:K.345

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: Q.360, N.364, N.389 Chain B: Q.360, N.364, N.389 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.364 Water bridges: A:Q.360, B:Q.360 NA.5: 6 residues within 4Å: Chain C: Q.360, N.364, N.389 Chain D: Q.360, N.364, N.389 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:N.389 Water bridges: D:Q.360, C:Q.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phan, I. et al., Structure of fumarate hydratase from Rickettsia prowazekii, the agent of typhus and suspected relative of the mitochondria. Acta Crystallogr.,Sect.F (2011)

Release Date

2009-07-14

Peptides

Fumarate hydratase class II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fumarate hydratase class II