SMTL ID : 3gvp.1

Human SAHH-like domain of human adenosylhomocysteinase 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: D.197, N.198, C.202, G.227, G.229, E.230, V.231, T.249, E.250, I.251, D.252, C.255, C.282, T.283, G.284, N.285, M.306, G.307, H.308, L.351, N.353 Chain C: Q.420, K.433 18 PLIP interactions: 13 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:V.231 Hydrogen bonds: A:G.229, A:V.231, A:T.249, A:I.251, A:D.252, A:N.285, A:M.306, A:N.353, C:Q.420, C:K.433, C:K.433 Water bridges: A:N.198, A:E.230, A:E.230, A:G.232, C:Q.420, C:K.433 NAD.2: 25 residues within 4Å: Chain B: V.165, D.197, N.198, C.202, G.227, G.229, E.230, V.231, T.249, E.250, I.251, D.252, C.255, C.282, T.283, G.284, N.285, V.288, M.306, G.307, H.308, L.351, N.353 Chain D: Q.420, K.433 18 PLIP interactions: 12 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: B:V.231 Hydrogen bonds: B:G.229, B:V.231, B:I.251, B:D.252, B:N.285, B:M.306, B:N.353, D:Q.420, D:Q.420, D:K.433, D:K.433 Water bridges: B:E.230, B:E.230, B:G.232, B:T.249, D:K.433 Salt bridges: D:K.433 NAD.3: 25 residues within 4Å: Chain A: Q.420, K.433 Chain C: D.197, N.198, C.202, G.227, G.229, E.230, V.231, T.249, E.250, I.251, D.252, C.255, C.282, T.283, G.284, N.285, V.288, M.306, G.307, H.308, L.351, N.353, L.354 16 PLIP interactions: 5 interactions with chain A, 11 interactions with chain C Hydrogen bonds: A:Q.420, A:Q.420, A:K.433, A:K.433, C:G.229, C:E.230, C:V.231, C:I.251, C:D.252, C:N.285, C:N.353, C:N.353 Salt bridges: A:K.433 Hydrophobic interactions: C:V.231 Water bridges: C:G.232, C:T.249 NAD.4: 24 residues within 4Å: Chain B: Q.420, K.433 Chain D: D.197, N.198, C.202, G.227, G.229, E.230, V.231, T.249, E.250, I.251, D.252, C.255, C.282, T.283, G.284, N.285, V.288, M.306, G.307, H.308, L.351, N.353 19 PLIP interactions: 13 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:V.231 Hydrogen bonds: D:V.231, D:T.249, D:I.251, D:D.252, D:N.285, D:M.306, D:N.353, B:Q.420, B:Q.420, B:K.433, B:K.433 Water bridges: D:S.205, D:G.229, D:G.229, D:E.230, D:E.230, B:K.433 Salt bridges: B:K.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siponen, M.I. et al., Human S-adenosyl homocysteine hydrolase-like 2 protein crystal structure. To be Published

Release Date

2009-06-09

Peptides

Adenosylhomocysteinase 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Adenosylhomocysteinase 3