SMTL ID : 3gw7.1

Crystal structure of a metal-dependent phosphohydrolase with conserved HD domain (yedJ) from Escherichia coli in complex with nickel ions. Northeast Structural Genomics Consortium Target ER63

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

8 x NI: NICKEL (II) ION(Non-covalent)(Non-functional Binders)

NI.1: 4 residues within 4Å: Chain A: H.29, H.58, D.59, D.127 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.29, A:D.127 NI.2: 3 residues within 4Å: Chain A: R.189, H.196 Chain B: E.217 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.196 NI.3: 2 residues within 4Å: Chain A: H.235, H.237 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.235, A:H.237 NI.4: 1 residues within 4Å: Ligands: NI.8 No protein-ligand interaction detected (PLIP) NI.5: 4 residues within 4Å: Chain B: H.29, H.58, D.59, D.127 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.29, B:D.127 NI.6: 3 residues within 4Å: Chain A: E.217 Chain B: R.189, H.196 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.196 NI.7: 2 residues within 4Å: Chain B: H.235, H.237 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.235, B:H.237 NI.8: 1 residues within 4Å: Ligands: NI.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forouhar, F. et al., Crystal structure of a metal-dependent phosphohydrolase with conserved HD domain (yedJ) from Escherichia coli in complex with nickel ions. Northeast Structural Genomics Consortium Target ER63. To be Published

Release Date

2009-04-14

Peptides

Uncharacterized protein yedJ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein yedJ