SMTL ID : 3gwo.1

Structure of the C-terminal Domain of a Putative HIV-1 gp41 Fusion Intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x JEF: O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)(Non-covalent)

JEF.1: 2 residues within 4Å: Chain A: W.37, W.41 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.41 JEF.2: 2 residues within 4Å: Chain A: L.40, W.43 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.40

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: W.2 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.2, B:N.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Role of a putative gp41 dimerization domain in human immunodeficiency virus type 1 membrane fusion. J.Virol. (2010)

Release Date

2009-12-15

Peptides

Envelope glycoprotein gp160: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Envelope glycoprotein gp160