SMTL ID : 3gxg.5 (5 other biounits)

Crystal structure of Putative phosphatase (DUF442) (YP_001181608.1) from SHEWANELLA PUTREFACIENS CN-32 at 1.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-octamer

Ligands

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Chain G: H.157 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.13, A.14, A.106 Chain G: N.124 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: N.2 Chain B: P.20 Chain G: P.20 Chain H: N.2 Ligand excluded by PLIP SO4.11: 8 residues within 4Å: Chain B: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Chain F: H.157 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: R.13, A.14, A.106 Chain F: N.124 Ligand excluded by PLIP SO4.18: 8 residues within 4Å: Chain C: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Chain E: H.157 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain C: R.13, A.14, A.106 Chain E: N.124 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain C: N.2 Chain D: P.20 Chain E: P.20 Chain F: N.2 Ligand excluded by PLIP SO4.28: 8 residues within 4Å: Chain D: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Chain H: H.157 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain D: R.13, A.14, A.106 Chain H: N.124 Ligand excluded by PLIP SO4.35: 8 residues within 4Å: Chain A: H.157 Chain E: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Ligand excluded by PLIP SO4.36: 4 residues within 4Å: Chain A: N.124 Chain E: R.13, A.14, A.106 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain A: P.20 Chain B: N.2 Chain E: N.2 Chain F: P.20 Ligand excluded by PLIP SO4.45: 8 residues within 4Å: Chain D: H.157 Chain F: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Ligand excluded by PLIP SO4.46: 4 residues within 4Å: Chain D: N.124 Chain F: R.13, A.14, A.106 Ligand excluded by PLIP SO4.52: 8 residues within 4Å: Chain C: H.157 Chain G: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Ligand excluded by PLIP SO4.53: 4 residues within 4Å: Chain C: N.124 Chain G: R.13, A.14, A.106 Ligand excluded by PLIP SO4.54: 4 residues within 4Å: Chain C: P.20 Chain D: N.2 Chain G: N.2 Chain H: P.20 Ligand excluded by PLIP SO4.62: 8 residues within 4Å: Chain B: H.157 Chain H: W.77, C.104, L.105, A.106, N.107, Y.108, R.109 Ligand excluded by PLIP SO4.63: 4 residues within 4Å: Chain B: N.124 Chain H: R.13, A.14, A.106 Ligand excluded by PLIP

20 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: G.11, Q.32, L.35 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.125, N.126, T.130 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: Q.78, K.143 Chain G: A.153 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: N.29, E.30, H.56 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: P.125, N.126, T.130 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain C: G.11, Q.32, L.35 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain C: P.125, N.126, T.130 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain C: Q.78, K.143 Chain E: A.153 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain D: N.29, E.30, H.56 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain D: P.125, N.126, T.130 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain E: G.11, Q.32, L.35 Ligand excluded by PLIP CL.39: 3 residues within 4Å: Chain E: P.125, N.126, T.130 Ligand excluded by PLIP CL.40: 3 residues within 4Å: Chain A: A.153 Chain E: Q.78, K.143 Ligand excluded by PLIP CL.47: 3 residues within 4Å: Chain F: N.29, E.30, H.56 Ligand excluded by PLIP CL.48: 3 residues within 4Å: Chain F: P.125, N.126, T.130 Ligand excluded by PLIP CL.55: 3 residues within 4Å: Chain G: G.11, Q.32, L.35 Ligand excluded by PLIP CL.56: 3 residues within 4Å: Chain G: P.125, N.126, T.130 Ligand excluded by PLIP CL.57: 3 residues within 4Å: Chain C: A.153 Chain G: Q.78, K.143 Ligand excluded by PLIP CL.64: 3 residues within 4Å: Chain H: N.29, E.30, H.56 Ligand excluded by PLIP CL.65: 3 residues within 4Å: Chain H: P.125, N.126, T.130 Ligand excluded by PLIP

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 5 residues within 4Å: Chain A: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: N.29, E.30, H.56 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: P.80, K.81, L.147 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain B: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain B: P.80, K.81, L.147, E.150 Ligand excluded by PLIP EDO.24: 5 residues within 4Å: Chain C: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain C: N.29, E.30, H.56 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain C: P.80, K.81, L.147 Ligand excluded by PLIP EDO.32: 5 residues within 4Å: Chain D: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.33: 4 residues within 4Å: Chain D: P.80, K.81, L.147, E.150 Ligand excluded by PLIP EDO.41: 5 residues within 4Å: Chain E: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.42: 3 residues within 4Å: Chain E: N.29, E.30, H.56 Ligand excluded by PLIP EDO.43: 3 residues within 4Å: Chain E: P.80, K.81, L.147 Ligand excluded by PLIP EDO.49: 5 residues within 4Å: Chain F: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.50: 4 residues within 4Å: Chain F: P.80, K.81, L.147, E.150 Ligand excluded by PLIP EDO.58: 5 residues within 4Å: Chain G: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.59: 3 residues within 4Å: Chain G: N.29, E.30, H.56 Ligand excluded by PLIP EDO.60: 3 residues within 4Å: Chain G: P.80, K.81, L.147 Ligand excluded by PLIP EDO.66: 5 residues within 4Å: Chain H: P.49, D.50, S.51, Y.72, P.74 Ligand excluded by PLIP EDO.67: 4 residues within 4Å: Chain H: P.80, K.81, L.147, E.150 Ligand excluded by PLIP

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 6 residues within 4Å: Chain A: D.136 Chain G: M.127, A.128, M.131, W.134, L.138 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:W.134 ACT.17: 5 residues within 4Å: Chain B: D.136 Chain F: M.127, A.128, M.131, L.138 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.136, B:D.136 ACT.27: 6 residues within 4Å: Chain C: D.136 Chain E: M.127, A.128, M.131, W.134, L.138 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:W.134 ACT.34: 5 residues within 4Å: Chain D: D.136 Chain H: M.127, A.128, M.131, L.138 2 PLIP interactions: 2 interactions with chain D Water bridges: D:D.136, D:D.136 ACT.44: 6 residues within 4Å: Chain A: M.127, A.128, M.131, W.134, L.138 Chain E: D.136 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.134 ACT.51: 5 residues within 4Å: Chain D: M.127, A.128, M.131, L.138 Chain F: D.136 2 PLIP interactions: 2 interactions with chain F Water bridges: F:D.136, F:D.136 ACT.61: 6 residues within 4Å: Chain C: M.127, A.128, M.131, W.134, L.138 Chain G: D.136 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:W.134 ACT.68: 5 residues within 4Å: Chain B: M.127, A.128, M.131, L.138 Chain H: D.136 2 PLIP interactions: 2 interactions with chain H Water bridges: H:D.136, H:D.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative phosphatase (DUF442) (YP_001181608.1) from SHEWANELLA PUTREFACIENS CN-32 at 1.60 A resolution. To be published

Release Date

2009-07-07

Peptides

Putative phosphatase (DUF442): ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Putative phosphatase (DUF442)

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