SMTL ID : 3gz9.1

Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd) in Complex with a Full Agonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x B7G: heptyl beta-D-glucopyranoside(Non-covalent)

B7G.1: 7 residues within 4Å: Chain A: T.91, V.109, K.113, L.262, E.265, I.266, K.268 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.91, A:L.262, A:E.265, A:I.266 Hydrogen bonds: A:K.113, A:E.265 Salt bridges: A:K.113

1 x D32: (2,3-dimethyl-4-{[2-(prop-2-yn-1-yloxy)-4-{[4-(trifluoromethyl)phenoxy]methyl}phenyl]sulfanyl}phenoxy)acetic acid(Non-covalent)

D32.2: 27 residues within 4Å: Chain A: I.43, L.49, W.58, V.75, F.76, R.78, C.79, Q.80, T.82, T.83, H.117, F.121, L.124, V.128, L.133, V.135, V.142, F.146, L.147, I.157, I.158, K.161, F.162, H.243, M.247, L.263, Y.267 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.58, A:V.75, A:F.76, A:R.78, A:F.121, A:L.124, A:V.128, A:L.133, A:V.135, A:I.157, A:I.158, A:K.161 Salt bridges: A:H.117, A:H.243 pi-Stacking: A:H.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Connors, R.V. et al., Identification of a PPARdelta agonist with partial agonistic activity on PPARgamma. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-06-30

Peptides

Peroxisome proliferator-activated receptor delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor delta