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SMTL ID : 3gzc.1
Structure of human selenocysteine lyase
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
homo-dimer
Ligands
2 x
PLR
:
(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE
(Covalent)
PLR.1:
15 residues within 4Å:
Chain A:
G.94
,
T.95
,
N.98
,
H.140
,
S.142
,
M.189
,
N.193
,
D.228
,
A.230
,
Q.231
,
V.251
,
H.253
,
K.254
Chain B:
G.290
,
T.291
17
PLIP interactions
:
13 interactions with chain A
,
4 interactions with chain B
Hydrophobic interactions:
A:H.140
,
A:A.230
,
A:K.254
Hydrogen bonds:
A:G.94
,
A:T.95
,
A:T.95
,
A:Q.231
,
A:K.254
,
B:T.291
Water bridges:
A:H.253
,
B:G.281
,
B:Q.283
,
B:G.290
Salt bridges:
A:H.140
,
A:H.253
,
A:K.254
pi-Stacking:
A:H.140
PLR.2:
15 residues within 4Å:
Chain A:
G.290
,
T.291
Chain B:
G.94
,
T.95
,
N.98
,
H.140
,
S.142
,
M.189
,
N.193
,
D.228
,
A.230
,
Q.231
,
V.251
,
H.253
,
K.254
16
PLIP interactions
:
5 interactions with chain A
,
11 interactions with chain B
Hydrogen bonds:
A:T.291
,
A:T.291
,
A:T.291
,
B:G.94
,
B:T.95
,
B:N.98
,
B:Q.231
Water bridges:
A:Q.283
,
A:G.290
,
B:H.253
Hydrophobic interactions:
B:H.140
,
B:K.254
Salt bridges:
B:H.140
,
B:H.253
,
B:K.254
pi-Stacking:
B:H.140
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Collins, R. et al., Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase. Plos One (2012)
Release Date
2009-04-28
Peptides
Selenocysteine lyase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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Selenocysteine lyase
Related Entries With Identical Sequence
3gzd.1
|
3gzd.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme