SMTL ID : 3gzi.1

CRYSTAL STRUCTURE OF a transcriptional regulator of the tetR family (SHEW_3567) FROM SHEWANELLA LOIHICA PV-4 AT 2.05 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x UNL: UNKNOWN LIGAND

UNL.1: 10 residues within 4Å: Chain A: R.84, Y.99, P.110, F.139, E.140, N.141, Q.164, F.168, M.171, V.172 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.84, A:R.84, A:Y.99, A:E.140, A:E.140, A:E.140, A:N.141, A:N.141, A:Q.164 Water bridges: A:E.140, B:R.184 UNL.11: 10 residues within 4Å: Chain B: R.84, Y.99, P.110, F.139, E.140, N.141, Q.164, F.168, M.171, V.172 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.84, B:R.84, B:Y.99, B:Y.99, B:E.140, B:E.140, B:N.141, B:N.141, B:Q.164 Water bridges: B:E.140, A:R.184

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Y.57, F.58, K.63 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: Q.97, Y.100, S.101, P.191, L.194, Q.195 Ligand excluded by PLIP EDO.4: 1 residues within 4Å: Chain A: M.74 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: A.78, H.81, K.82, R.85 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: L.77, L.80, H.81, R.84, F.139 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: A.127, E.128, K.131 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: S.39, I.40, R.41 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: Y.35, A.36, L.119, E.125, N.126, V.129 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: I.31, T.72, H.108, F.109 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain B: Y.57, F.58, K.63 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain B: Q.97, Y.100, S.101, P.191, L.194, Q.195 Ligand excluded by PLIP EDO.14: 1 residues within 4Å: Chain B: M.74 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain B: A.78, H.81, K.82, R.85 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain B: L.77, L.80, H.81, R.84, F.139 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain B: A.127, E.128, K.131 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain B: S.39, I.40, R.41 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain B: Y.35, A.36, L.119, E.125, N.126, V.129 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain B: I.31, T.72, H.108, F.109 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of TETR family transcriptional regulator (YP_001095692.1) from SHEWANELLA SP. PV-4 at 2.05 A resolution. To be published

Release Date

2009-04-21

Peptides

Transcriptional regulator, TetR family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Transcriptional regulator, TetR family