SMTL ID : 3gzn.2 (1 other biounit)

Structure of NEDD8-activating enzyme in complex with NEDD8 and MLN4924

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.220, C.223, C.364, C.367 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.220, B:C.223, B:C.364, B:C.367

1 x B39: [(1S,2S,4R)-4-{4-[(1S)-2,3-dihydro-1H-inden-1-ylamino]-7H-pyrrolo[2,3-d]pyrimidin-7-yl}-2-hydroxycyclopentyl]methyl sulfamate(Covalent)

B39.2: 21 residues within 4Å: Chain B: G.76, G.78, G.79, D.100, M.101, D.102, R.111, Q.112, K.124, N.146, K.147, I.148, Q.149, G.165, L.166, D.167, I.170, A.171, W.174 Chain C: G.81, G.82 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:I.148, B:Q.149, B:L.166, B:I.170, B:A.171, B:W.174 Hydrogen bonds: B:G.79, B:M.101, B:R.111, B:K.124, B:K.124, B:I.148, B:Q.149, C:G.82 Salt bridges: B:K.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brownell, J.E. et al., Substrate-assisted inhibition of ubiquitin-like protein-activating enzymes: the NEDD8 E1 inhibitor MLN4924 forms a NEDD8-AMP mimetic in situ. Mol.Cell (2010)

Release Date

2010-02-02

Peptides

NEDD8-activating enzyme E1 regulatory subunit: A
NEDD8-activating enzyme E1 catalytic subunit: B
NEDD8: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
J

NEDD8-activating enzyme E1 regulatory subunit

NEDD8-activating enzyme E1 catalytic subunit

NEDD8

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