SMTL ID : 3h01.1

Structure of the C-terminal Domain of a Putative HIV-1 gp41 Fusion Intermediate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

8 x HEZ: HEXANE-1,6-DIOL(Non-covalent)(Non-functional Binders)

HEZ.1: 4 residues within 4Å: Chain A: K.36, W.37, L.40 Ligands: HEZ.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.37, A:L.40 Hydrogen bonds: A:K.36 Water bridges: A:W.37 HEZ.2: 2 residues within 4Å: Ligands: HEZ.1, HEZ.3 No protein-ligand interaction detected (PLIP) HEZ.3: 1 residues within 4Å: Ligands: HEZ.2 No protein-ligand interaction detected (PLIP) HEZ.4: 1 residues within 4Å: Ligands: HEZ.5 No protein-ligand interaction detected (PLIP) HEZ.5: 3 residues within 4Å: Chain A: K.36, S.39 Ligands: HEZ.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.39, A:S.39 HEZ.6: 5 residues within 4Å: Chain A: W.2, I.6 Chain B: W.37, W.41 Ligands: HEZ.7 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:W.41 Hydrophobic interactions: A:W.2, A:W.2 HEZ.7: 1 residues within 4Å: Ligands: HEZ.6 No protein-ligand interaction detected (PLIP) HEZ.8: 2 residues within 4Å: Chain B: K.36, S.39 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.36 Hydrogen bonds: B:S.39, B:S.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Role of a putative gp41 dimerization domain in human immunodeficiency virus type 1 membrane fusion. J.Virol. (2010)

Release Date

2009-12-15

Peptides

Envelope glycoprotein gp160: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Envelope glycoprotein gp160