SMTL ID : 3h0w.1

Human AdoMetDC with 5'-Deoxy-5'-[(N-dimethyl)amino]-8-methyl-adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PUT: 1,4-DIAMINOBUTANE(Non-covalent)

PUT.1: 6 residues within 4Å: Chain A: L.13, E.15 Chain B: F.43, D.106, T.108, F.217 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.217 Hydrogen bonds: B:T.108, B:T.108, A:E.15

1 x N8M: 5'-deoxy-5'-(dimethylamino)-8-methyladenosine(Non-covalent)

N8M.2: 14 residues within 4Å: Chain A: F.7, S.66, E.67 Chain B: C.14, F.155, N.156, C.158, G.159, Y.160, S.161, I.176, T.177, P.178, E.179 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:I.176, A:E.67, A:E.67 pi-Stacking: B:F.155, B:F.155

1 x PYR: PYRUVIC ACID(Covalent)

PYR.3: 6 residues within 4Å: Chain A: V.64, L.65 Chain B: S.1, K.12, T.13, H.175 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.65 Water bridges: B:C.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bale, S. et al., Role of the sulfonium center in determining the ligand specificity of human s-adenosylmethionine decarboxylase. Biochemistry (2009)

Release Date

2009-06-30

Peptides

S-adenosylmethionine decarboxylase proenzyme: A
S-adenosylmethionine decarboxylase proenzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

S-adenosylmethionine decarboxylase proenzyme

S-adenosylmethionine decarboxylase proenzyme

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