SMTL ID : 3h12.1

Crystal structure of putative mandelate racemase from Bordetella Bronchiseptica RB50

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-octamer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: K.171, K.173, D.201, E.227, E.254 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.171, A:K.173, A:E.227 Water bridges: A:D.201 NA.2: 5 residues within 4Å: Chain B: K.171, K.173, D.201, E.227, E.254 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.171, B:K.173, B:E.254 NA.3: 5 residues within 4Å: Chain C: K.171, K.173, D.201, E.227, E.254 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.171, C:K.171, C:K.173 Water bridges: C:D.201 NA.4: 5 residues within 4Å: Chain D: K.171, K.173, D.201, E.227, E.254 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.171, D:K.173, D:E.227 NA.5: 5 residues within 4Å: Chain E: K.171, K.173, D.201, E.227, E.254 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:K.171, E:K.173, E:K.173 Water bridges: E:D.201 NA.6: 5 residues within 4Å: Chain F: K.171, K.173, D.201, E.227, E.254 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:K.171, F:K.171, F:K.173 NA.7: 5 residues within 4Å: Chain G: K.171, K.173, D.201, E.227, E.254 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:K.171, G:K.171, G:K.173 Water bridges: G:D.201 NA.8: 5 residues within 4Å: Chain H: K.171, K.173, D.201, E.227, E.254 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:K.171, H:K.173, H:E.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of putative mandelate racemase from Bordetella Bronchiseptica RB50. To be Published

Release Date

2009-04-21

Peptides

mandelate racemase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

mandelate racemase

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