SMTL ID : 3h1w.1

Crystal structure of mannose 6-phosphate isomerase bound with zinc and yttrium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.355, K.356, D.357, P.377, V.378, N.379 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.355, A:D.357, A:P.377 EDO.2: 8 residues within 4Å: Chain A: L.190, K.197, D.229, S.230, G.278, L.279, T.280, I.284 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.197, A:S.230, A:L.279, A:T.280 Water bridges: A:K.197, A:S.230 EDO.3: 10 residues within 4Å: Chain A: I.98, F.186, L.189, L.190, S.230, G.231, F.233, S.234, A.277, G.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.233, A:A.277 EDO.4: 3 residues within 4Å: Chain A: N.8, V.10 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.8 EDO.5: 4 residues within 4Å: Chain A: N.8, I.27, G.366 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.8 Water bridges: A:N.8

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 5 residues within 4Å: Chain A: H.101, E.136, L.251, H.257 Ligands: Y1.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.101, A:E.136, A:H.257, H2O.9

1 x Y1: YTTRIUM ION(Non-covalent)

Y1.7: 3 residues within 4Å: Chain A: E.136, E.266 Ligands: ZN.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sagurthi, S.R. et al., Crystal structure of mannose 6-phosphate isomerase fromSalmonella typhimurium bound to metal atoms and substrate: Implications for catalytic mechanism. To be published

Release Date

2009-05-19

Peptides

Mannose-6-phosphate isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mannose-6-phosphate isomerase

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