SMTL ID : 3h2p.1

Human SOD1 D124V Variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.46, H.48, H.63, H.120 Ligands: MLI.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.46, A:H.48, A:H.63, A:H.120 ZN.2: 2 residues within 4Å: Chain A: H.63, H.80 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.63, A:H.80 ZN.5: 4 residues within 4Å: Chain B: H.46, H.48, H.120 Ligands: MLI.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.46, B:H.48, B:H.120

2 x MLI: MALONATE ION(Non-functional Binders)

MLI.3: 7 residues within 4Å: Chain A: H.46, H.48, H.63, H.120, A.140, R.143 Ligands: ZN.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.140, A:G.141 Water bridges: A:H.63 Salt bridges: A:H.46, A:H.48, A:H.48, A:H.63, A:H.120, A:H.120, A:R.143 MLI.6: 7 residues within 4Å: Chain B: H.46, H.48, H.63, H.120, A.140, R.143 Ligands: ZN.5 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.63, B:R.143 Salt bridges: B:H.46, B:H.48, B:H.48, B:H.63, B:H.120

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.4: 2 residues within 4Å: Chain B: A.1, T.2 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seetharaman, S.V. et al., Structures of Pathogenic SOD1 Mutants H80R and D124V: Disrupted Zinc-binding and Compromised Post-translational Modification by the Copper Chaperone CCS. To be Published

Release Date

2010-05-05

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide dismutase [Cu-Zn]