SMTL ID : 3h30.2 (2 other biounits)

Crystal structure of the catalytic subunit of human protein kinase CK2 with 5,6-dichloro-1-beta-D-ribofuranosylbenzimidazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x RFZ: 5,6-dichloro-1-beta-D-ribofuranosyl-1H-benzimidazole(Non-covalent)

RFZ.1: 12 residues within 4Å: Chain A: L.45, G.46, R.47, G.48, V.53, V.66, I.95, V.116, N.117, N.118, D.120, I.174 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.53, A:I.174 Water bridges: A:R.47 Halogen bonds: A:V.116

18 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: V.11, H.148, T.314, A.315 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.80, R.155 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.155, Y.188, N.189 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: K.122, K.158, P.159, H.160 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: K.68, F.113, D.175 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: H.168, K.170 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: W.24 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: R.19, M.150 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: K.229, F.232, F.233, H.234, R.244 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: E.296, D.299, H.321, P.322 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: D.253, R.278, R.306, Y.307 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: V.243 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain A: H.29, V.31, E.32, I.82, E.86 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain A: R.333 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: R.19, P.20, Y.23 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: S.194, R.195 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain A: K.303, H.321 Ligand excluded by PLIP CL.19: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raaf, J. et al., The CK2alpha/CK2beta Interface of Human Protein Kinase CK2 Harbors a Binding Pocket for Small Molecules. Chem.Biol. (2008)

Release Date

2009-05-12

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Casein kinase II subunit alpha

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