SMTL ID : 3h32.1

Crystal structure of D-dimer from human fibrin complexed with Gly-His-Arg-Pro-Tyr-amide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.60 Å
Oligo State
hetero-oligomer
Ligands
2 x GLY- HIS- ARG- PRO- TYR: Fibrin B knob pentapeptide(Non-covalent)
4 x CA: CALCIUM ION(Non-covalent)
2 x NAG- NAG- MAN- MAN- MAN- NAG- GAL- SIA: SUGAR (8-MER)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Pandi, L. et al., Two families of synthetic peptides that enhance fibrin turbidity and delay fibrinolysis by different mechanisms. Biochemistry (2009)
Release Date
2009-07-28
Peptides
Fibrinogen alpha chain: AD
Fibrinogen beta chain: BE
Fibrinogen gamma chain, isoform gamma-A: CF
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
D
D
B
B
E
E
C
C
F
F

Fibrinogen alpha chain

Toggle Identical (AD)

Fibrinogen beta chain

Toggle Identical (BE)

Fibrinogen gamma chain, isoform gamma-A