SMTL ID : 3h3c.1

Crystal structure of PYK2 in complex with Sulfoximine-substituted trifluoromethylpyrimidine analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.19, F.20, K.42, D.152, F.153 Ligands: P1E.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.20, A:D.152 Salt bridges: A:K.42 SO4.2: 5 residues within 4Å: Chain A: L.204, S.205, K.208, P.232, D.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.233 Salt bridges: A:K.208 SO4.3: 2 residues within 4Å: Chain A: H.68, K.120 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.68 SO4.4: 3 residues within 4Å: Chain A: H.70, L.113, Q.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.117 Salt bridges: A:H.70, A:K.120 SO4.5: 2 residues within 4Å: Chain A: K.107, V.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.108 Water bridges: A:L.109 Salt bridges: A:K.107

1 x P1E: 4-{[4-{[(1R,2R)-2-(dimethylamino)cyclopentyl]amino}-5-(trifluoromethyl)pyrimidin-2-yl]amino}-N-methylbenzenesulfonamide(Non-covalent)

P1E.6: 15 residues within 4Å: Chain A: L.16, V.24, A.40, V.72, M.87, E.88, L.89, Y.90, G.93, E.94, H.97, R.138, L.141, D.152 Ligands: SO4.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.16, A:L.16, A:V.24, A:L.141 Hydrogen bonds: A:Y.90, A:Y.90 Salt bridges: A:E.94 Halogen bonds: A:D.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, D.P. et al., Sulfoximine-substituted trifluoromethylpyrimidine analogs as inhibitors of proline-rich tyrosine kinase 2 (PYK2) show reduced hERG activity. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-05-26

Peptides

Protein tyrosine kinase 2 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein tyrosine kinase 2 beta

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