- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x I2C: 5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine(Non-covalent)
- 2 x FE2: FE (II) ION(Non-functional Binders)
- 4 x CMO: CARBON MONOXIDE(Non-functional Binders)
CMO.3: 9 residues within 4Å:- Chain A: H.14, W.148, C.204, V.205, P.206
- Ligands: I2C.1, FE2.2, CMO.4, DTV.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:C.204
CMO.4: 6 residues within 4Å:- Chain A: A.176, C.204
- Ligands: I2C.1, FE2.2, CMO.3, DTV.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:C.204
CMO.9: 9 residues within 4Å:- Chain B: H.14, W.148, C.204, V.205, P.206
- Ligands: I2C.7, FE2.8, CMO.10, DTV.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:C.204
CMO.10: 6 residues within 4Å:- Chain B: A.176, C.204
- Ligands: I2C.7, FE2.8, CMO.9, DTV.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:C.204
- 2 x DTV: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL(Non-covalent)
DTV.5: 7 residues within 4Å:- Chain A: T.13, A.17, A.176
- Ligands: I2C.1, FE2.2, CMO.3, CMO.4
No protein-ligand interaction detected (PLIP)DTV.11: 7 residues within 4Å:- Chain B: T.13, A.17, A.176
- Ligands: I2C.7, FE2.8, CMO.9, CMO.10
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.13
- 2 x H4M: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN(Non-covalent)
H4M.6: 12 residues within 4Å:- Chain A: K.151, G.152, C.250, D.251, M.252, S.254
- Chain B: L.275, P.278, F.281, T.317, S.320, M.321
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:C.250, A:S.254, B:T.317, B:S.320
- Water bridges: A:M.252
- Salt bridges: A:K.151
- Hydrophobic interactions: B:L.275
H4M.12: 12 residues within 4Å:- Chain A: L.275, P.278, F.281, T.317, S.320, M.321
- Chain B: K.151, G.152, C.250, D.251, M.252, S.254
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.275
- Hydrogen bonds: A:T.317, A:S.320, B:C.250, B:S.254
- Water bridges: B:M.252
- Salt bridges: B:K.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hiromoto, T. et al., The crystal structure of an [Fe]-hydrogenase-substrate complex reveals the framework for H2 activation. Angew.Chem.Int.Ed.Engl. (2009)
- Release Date
- 2009-09-01
- Peptides
- 5,10-methenyltetrahydromethanopterin hydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x I2C: 5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine(Non-covalent)
- 2 x FE2: FE (II) ION(Non-functional Binders)
- 4 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 2 x DTV: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL(Non-covalent)
- 2 x H4M: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hiromoto, T. et al., The crystal structure of an [Fe]-hydrogenase-substrate complex reveals the framework for H2 activation. Angew.Chem.Int.Ed.Engl. (2009)
- Release Date
- 2009-09-01
- Peptides
- 5,10-methenyltetrahydromethanopterin hydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A