SMTL ID : 3h6i.1

Crystal Structure of Mycobacterium Tuberculosis Proteasome Modified by inhibitor GL1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-14-14-mer

Ligands

102 x DMF: DIMETHYLFORMAMIDE(Non-covalent)

DMF.1: 5 residues within 4Å: Chain A: G.77, G.78, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.2: 5 residues within 4Å: Chain A: R.91, R.219 Chain H: A.60, E.64 Ligands: DMF.33 Ligand excluded by PLIP DMF.3: 5 residues within 4Å: Chain B: N.73, L.74, G.77, V.102, T.106 Ligand excluded by PLIP DMF.4: 4 residues within 4Å: Chain B: R.91, R.219 Chain C: A.60, E.64 Ligand excluded by PLIP DMF.5: 4 residues within 4Å: Chain B: T.84, Y.87 Chain C: L.58, V.61 Ligand excluded by PLIP DMF.6: 6 residues within 4Å: Chain C: E.132, E.134, Y.136, Q.137, K.147 Chain J: R.29 Ligand excluded by PLIP DMF.7: 3 residues within 4Å: Chain C: Y.172, A.175, D.176 Ligand excluded by PLIP DMF.8: 3 residues within 4Å: Chain C: Y.35, I.36, R.57 Ligand excluded by PLIP DMF.9: 3 residues within 4Å: Chain C: R.221 Chain E: V.187, R.188 Ligand excluded by PLIP DMF.10: 6 residues within 4Å: Chain C: N.81, I.85, R.88 Chain I: Y.87, A.88 Chain J: R.57 Ligand excluded by PLIP DMF.11: 4 residues within 4Å: Chain C: A.77, W.129 Chain J: E.54, R.57 Ligand excluded by PLIP DMF.12: 3 residues within 4Å: Chain C: I.196, D.198, V.203 Ligand excluded by PLIP DMF.13: 6 residues within 4Å: Chain C: G.140, S.141, G.142, S.143, L.144, F.145 Ligand excluded by PLIP DMF.14: 6 residues within 4Å: Chain D: Q.51, S.54, R.75 Chain E: K.68, G.71 Chain K: R.97 Ligand excluded by PLIP DMF.15: 5 residues within 4Å: Chain D: Y.87 Chain E: R.57 Chain R: N.81, I.85, R.88 Ligand excluded by PLIP DMF.16: 5 residues within 4Å: Chain D: G.77, G.78, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.17: 5 residues within 4Å: Chain D: R.91, R.219 Chain E: A.60, V.61, E.64 Ligand excluded by PLIP DMF.18: 4 residues within 4Å: Chain E: Y.172, A.175, D.176, G.183 Ligand excluded by PLIP DMF.19: 6 residues within 4Å: Chain E: Y.35, I.36, V.53, A.56, R.57, A.60 Ligand excluded by PLIP DMF.20: 5 residues within 4Å: Chain D: R.76 Chain E: E.70 Chain K: F.81, R.85, Q.98 Ligand excluded by PLIP DMF.21: 5 residues within 4Å: Chain E: A.77, I.80, N.81, W.129 Chain L: R.57 Ligand excluded by PLIP DMF.22: 6 residues within 4Å: Chain E: E.54, R.57 Chain R: A.77, I.80, N.81, W.129 Ligand excluded by PLIP DMF.23: 6 residues within 4Å: Chain E: W.129, N.130, I.131 Chain L: A.49, A.50, V.53 Ligand excluded by PLIP DMF.24: 6 residues within 4Å: Chain F: L.74, G.77, G.78, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.25: 10 residues within 4Å: Chain F: Q.51, I.53, S.54, D.72, R.75, R.224 Chain G: L.69, E.70, G.71 Chain W: R.97 Ligand excluded by PLIP DMF.26: 6 residues within 4Å: Chain G: Y.35, I.36, V.53, A.56, R.57, A.60 Ligand excluded by PLIP DMF.27: 3 residues within 4Å: Chain G: Y.172, A.175, D.176 Ligand excluded by PLIP DMF.28: 5 residues within 4Å: Chain 1: K.152, L.153, Q.156 Chain G: K.152, L.153 Ligand excluded by PLIP DMF.29: 5 residues within 4Å: Chain 1: D.177 Chain G: L.144, K.147 Chain X: I.26, R.29 Ligand excluded by PLIP DMF.30: 2 residues within 4Å: Chain H: R.221 Chain L: R.188 Ligand excluded by PLIP DMF.31: 3 residues within 4Å: Chain H: V.187 Chain L: R.221 Chain P: K.151 Ligand excluded by PLIP DMF.32: 3 residues within 4Å: Chain H: Y.172, A.175, D.176 Ligand excluded by PLIP DMF.33: 4 residues within 4Å: Chain H: I.36, V.53, R.57 Ligands: DMF.2 Ligand excluded by PLIP DMF.34: 4 residues within 4Å: Chain H: L.186, V.187, R.188, G.189 Ligand excluded by PLIP DMF.35: 6 residues within 4Å: Chain C: Y.35, A.49, V.53 Chain H: W.129, N.130, I.131 Ligand excluded by PLIP DMF.36: 5 residues within 4Å: Chain C: E.54, R.57 Chain H: A.77, N.81, W.129 Ligand excluded by PLIP DMF.37: 4 residues within 4Å: Chain I: R.91, R.219 Chain J: A.60, E.64 Ligand excluded by PLIP DMF.38: 5 residues within 4Å: Chain I: G.77, G.78, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.39: 5 residues within 4Å: Chain J: X.1, S.20, T.21, G.47, T.48 Ligand excluded by PLIP DMF.40: 5 residues within 4Å: Chain J: Y.35, I.36, V.53, R.57, A.60 Ligand excluded by PLIP DMF.41: 3 residues within 4Å: Chain J: Y.172, A.175, D.176 Ligand excluded by PLIP DMF.42: 7 residues within 4Å: Chain K: N.73, L.74, G.77, G.78, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.43: 6 residues within 4Å: Chain K: R.91, R.219 Chain L: A.60, V.61, E.64 Ligands: DMF.44 Ligand excluded by PLIP DMF.44: 5 residues within 4Å: Chain L: I.36, V.53, A.56, R.57 Ligands: DMF.43 Ligand excluded by PLIP DMF.45: 4 residues within 4Å: Chain L: Y.172, A.175, D.176, G.183 Ligand excluded by PLIP DMF.46: 5 residues within 4Å: Chain L: A.77, N.81, W.129 Chain N: E.54, R.57 Ligand excluded by PLIP DMF.47: 5 residues within 4Å: Chain M: G.77, G.78, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.48: 5 residues within 4Å: Chain M: R.91, R.219 Chain N: A.60, V.61, E.64 Ligand excluded by PLIP DMF.49: 4 residues within 4Å: Chain N: R.221 Chain P: V.187, R.188 Chain V: K.151 Ligand excluded by PLIP DMF.50: 6 residues within 4Å: Chain G: E.54, R.57 Chain N: A.77, I.80, N.81, W.129 Ligand excluded by PLIP DMF.51: 5 residues within 4Å: Chain N: Y.35, I.36, V.53, R.57, A.60 Ligand excluded by PLIP DMF.52: 2 residues within 4Å: Chain N: Y.172, D.176 Ligand excluded by PLIP DMF.53: 5 residues within 4Å: Chain N: V.87, R.88, N.90, A.125, G.127 Ligand excluded by PLIP DMF.54: 7 residues within 4Å: Chain N: G.140, S.141, G.142, S.143, L.144, F.145 Chain V: L.144 Ligand excluded by PLIP DMF.55: 5 residues within 4Å: Chain G: A.49, V.53 Chain N: W.129, N.130, I.131 Ligand excluded by PLIP DMF.56: 5 residues within 4Å: Chain O: L.74, G.77, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.57: 6 residues within 4Å: Chain O: R.91, R.219 Chain P: R.57, A.60, V.61, E.64 Ligand excluded by PLIP DMF.58: 4 residues within 4Å: Chain P: Y.172, A.175, D.176, G.183 Ligand excluded by PLIP DMF.59: 2 residues within 4Å: Chain P: I.196, D.198 Ligand excluded by PLIP DMF.60: 6 residues within 4Å: Chain H: E.54, R.57 Chain P: A.77, I.80, N.81, W.129 Ligand excluded by PLIP DMF.61: 7 residues within 4Å: Chain H: Y.35, A.49, A.50, V.53 Chain P: W.129, N.130, I.131 Ligand excluded by PLIP DMF.62: 3 residues within 4Å: Chain P: I.36, V.53, R.57 Ligand excluded by PLIP DMF.63: 4 residues within 4Å: Chain Q: G.77, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.64: 6 residues within 4Å: Chain D: F.81, Q.98, N.101, V.102 Chain Q: R.76 Chain R: E.70 Ligand excluded by PLIP DMF.65: 4 residues within 4Å: Chain J: R.221 Chain R: V.187, R.188 Chain Z: K.151 Ligand excluded by PLIP DMF.66: 6 residues within 4Å: Chain R: Y.35, I.36, V.53, A.56, R.57, A.60 Ligand excluded by PLIP DMF.67: 3 residues within 4Å: Chain R: Y.172, A.175, D.176 Ligand excluded by PLIP DMF.68: 4 residues within 4Å: Chain Q: R.91, R.219 Chain R: A.60, E.64 Ligand excluded by PLIP DMF.69: 5 residues within 4Å: Chain S: L.74, G.77, G.78, Y.103, T.106 Ligand excluded by PLIP DMF.70: 4 residues within 4Å: Chain S: R.91, R.219 Chain T: A.60, E.64 Ligand excluded by PLIP DMF.71: 6 residues within 4Å: Chain 0: F.81, R.85, Q.98, V.102 Chain S: R.76 Chain T: E.70 Ligand excluded by PLIP DMF.72: 5 residues within 4Å: Chain T: D.38, D.39, Y.40, P.73, K.79 Ligand excluded by PLIP DMF.73: 6 residues within 4Å: Chain T: Y.35, I.36, V.53, A.56, R.57, A.60 Ligand excluded by PLIP DMF.74: 4 residues within 4Å: Chain T: Y.172, A.175, D.176, G.183 Ligand excluded by PLIP DMF.75: 7 residues within 4Å: Chain 1: Y.35, A.49, A.50, V.53 Chain T: W.129, N.130, I.131 Ligand excluded by PLIP DMF.76: 3 residues within 4Å: Chain T: R.18, D.30, R.32 Ligand excluded by PLIP DMF.77: 5 residues within 4Å: Chain U: L.74, G.77, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.78: 6 residues within 4Å: Chain 0: R.76 Chain 1: E.70 Chain U: Q.98, N.101, V.102, Q.105 Ligand excluded by PLIP DMF.79: 5 residues within 4Å: Chain U: R.91, R.219 Chain V: A.60, E.64 Ligands: DMF.83 Ligand excluded by PLIP DMF.80: 6 residues within 4Å: Chain 1: N.81, I.85, R.88 Chain U: Y.87, A.88 Chain V: R.57 Ligand excluded by PLIP DMF.81: 2 residues within 4Å: Chain G: R.221 Chain V: R.188 Ligand excluded by PLIP DMF.82: 2 residues within 4Å: Chain V: I.196, V.203 Ligand excluded by PLIP DMF.83: 6 residues within 4Å: Chain V: Y.35, I.36, V.53, R.57, A.60 Ligands: DMF.79 Ligand excluded by PLIP DMF.84: 6 residues within 4Å: Chain P: E.54, R.57 Chain V: A.77, I.80, N.81, W.129 Ligand excluded by PLIP DMF.85: 5 residues within 4Å: Chain W: R.76 Chain Y: F.81, R.85, Q.98, V.102 Ligand excluded by PLIP DMF.86: 5 residues within 4Å: Chain W: L.74, G.77, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.87: 6 residues within 4Å: Chain X: Y.35, I.36, V.53, R.57, A.60 Ligands: DMF.89 Ligand excluded by PLIP DMF.88: 3 residues within 4Å: Chain X: I.196, D.198, V.203 Ligand excluded by PLIP DMF.89: 7 residues within 4Å: Chain W: R.91, R.219 Chain X: R.57, A.60, V.61, E.64 Ligands: DMF.87 Ligand excluded by PLIP DMF.90: 6 residues within 4Å: Chain Q: R.85, Q.98, N.101, V.102 Chain Y: R.76 Chain Z: E.70 Ligand excluded by PLIP DMF.91: 5 residues within 4Å: Chain Z: Y.172, A.175, D.176, G.183, P.184 Ligand excluded by PLIP DMF.92: 4 residues within 4Å: Chain Z: Y.35, I.36, R.57 Ligands: DMF.96 Ligand excluded by PLIP DMF.93: 3 residues within 4Å: Chain Z: I.196, D.198, V.203 Ligand excluded by PLIP DMF.94: 5 residues within 4Å: Chain R: R.57 Chain Z: A.77, I.80, N.81, W.129 Ligand excluded by PLIP DMF.95: 7 residues within 4Å: Chain R: Y.35, A.49, A.50, V.53 Chain Z: W.129, N.130, I.131 Ligand excluded by PLIP DMF.96: 5 residues within 4Å: Chain Y: R.91, R.219 Chain Z: A.60, E.64 Ligands: DMF.92 Ligand excluded by PLIP DMF.97: 5 residues within 4Å: Chain 0: L.74, G.77, V.102, Y.103, T.106 Ligand excluded by PLIP DMF.98: 4 residues within 4Å: Chain 0: D.83, T.84 Chain 1: L.58, H.65 Ligand excluded by PLIP DMF.99: 7 residues within 4Å: Chain 0: R.91, R.219 Chain 1: R.57, A.60, V.61, E.64 Ligands: DMF.102 Ligand excluded by PLIP DMF.100: 5 residues within 4Å: Chain 1: Y.172, A.175, D.176, G.183, P.184 Ligand excluded by PLIP DMF.101: 4 residues within 4Å: Chain 1: I.196, D.198, V.203, R.209 Ligand excluded by PLIP DMF.102: 5 residues within 4Å: Chain 1: Y.35, I.36, V.53, A.60 Ligands: DMF.99 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, G. et al., Inhibitors selective for mycobacterial versus human proteasomes. Nature (2009)

Release Date

2009-09-15

Peptides

Proteasome (Alpha subunit) PrcA: ABDFIKMOQSUWY0
Proteasome (Beta subunit) PrcB: CEGHJLNPRTVXZ1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

F
F

I
I

K
K

M
M

O
O

Q
Q

S
S

U
U

W
W

Y
Y

0
1

C
C

E
E

G
G

H
H

J
J

L
L

N
N

P
P

R
R

T
T

V
V

X
X

Z
Z

1
2

Proteasome (Alpha subunit) PrcA

Proteasome (Beta subunit) PrcB

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