- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 31 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.2: 3 residues within 4Å:- Chain A: R.92, N.94, S.381
Ligand excluded by PLIPUNX.3: 3 residues within 4Å:- Chain A: I.245, K.249, V.276
Ligand excluded by PLIPUNX.4: 3 residues within 4Å:- Chain A: K.108, R.111, T.112
Ligand excluded by PLIPUNX.5: 4 residues within 4Å:- Chain A: E.82, K.85, S.86, R.395
Ligand excluded by PLIPUNX.6: 5 residues within 4Å:- Chain A: C.336, N.337, K.341, D.376, R.464
Ligand excluded by PLIPUNX.7: 5 residues within 4Å:- Chain A: D.255, V.256, D.257, Q.477, R.480
Ligand excluded by PLIPUNX.8: 5 residues within 4Å:- Chain A: Q.329, D.366, N.369, A.370
- Chain B: S.365
Ligand excluded by PLIPUNX.9: 7 residues within 4Å:- Chain A: R.92, N.94, S.96, D.132, T.133, S.262, K.289
Ligand excluded by PLIPUNX.10: 5 residues within 4Å:- Chain A: K.266, A.267, S.268, R.298, E.301
Ligand excluded by PLIPUNX.11: 6 residues within 4Å:- Chain A: T.428, S.456, G.539, F.540, T.541
- Ligands: FBP.1
Ligand excluded by PLIPUNX.12: 3 residues within 4Å:- Chain A: E.291, G.314, D.315
Ligand excluded by PLIPUNX.15: 6 residues within 4Å:- Chain B: R.92, N.94, S.96, D.132, T.133, K.289
Ligand excluded by PLIPUNX.16: 8 residues within 4Å:- Chain B: Y.194, V.195, D.196, D.197, G.198, G.227, V.228, N.229
Ligand excluded by PLIPUNX.17: 7 residues within 4Å:- Chain B: M.353, I.354, E.383, G.387, D.388, Y.389, P.390
Ligand excluded by PLIPUNX.18: 7 residues within 4Å:- Chain A: N.369
- Chain B: Q.329, K.330, N.369, A.370, D.373
- Ligands: UNX.21
Ligand excluded by PLIPUNX.19: 2 residues within 4Å:- Chain B: E.291, D.315
Ligand excluded by PLIPUNX.20: 5 residues within 4Å:- Chain B: S.456, G.539, F.540, T.541
- Ligands: FBP.14
Ligand excluded by PLIPUNX.21: 6 residues within 4Å:- Chain A: S.365
- Chain B: R.313, Q.329, D.366, A.370
- Ligands: UNX.18
Ligand excluded by PLIPUNX.22: 5 residues within 4Å:- Chain B: A.312, R.313, G.314, D.315, T.347
Ligand excluded by PLIPUNX.23: 7 residues within 4Å:- Chain B: T.347, Q.348, M.349, M.379, L.380, S.381, E.383
Ligand excluded by PLIPUNX.26: 4 residues within 4Å:- Chain C: S.439, F.440, R.466, A.467
Ligand excluded by PLIPUNX.27: 8 residues within 4Å:- Chain C: Y.194, V.195, D.196, D.197, G.198, G.227, V.228, N.229
Ligand excluded by PLIPUNX.28: 3 residues within 4Å:- Chain C: A.312, D.315, T.347
Ligand excluded by PLIPUNX.29: 2 residues within 4Å:- Chain C: A.500, W.501
Ligand excluded by PLIPUNX.31: 3 residues within 4Å:- Chain D: G.340, R.462, R.464
Ligand excluded by PLIPUNX.32: 7 residues within 4Å:- Chain D: T.347, Q.348, M.349, M.379, L.380, S.381, E.383
Ligand excluded by PLIPUNX.33: 1 residues within 4Å:- Ligands: D8G.25
Ligand excluded by PLIPUNX.34: 6 residues within 4Å:- Chain D: T.428, S.456, G.539, F.540, T.541
- Ligands: FBP.30
Ligand excluded by PLIPUNX.35: 5 residues within 4Å:- Chain C: L.327
- Chain D: Q.36, S.56, E.403, A.406
Ligand excluded by PLIPUNX.36: 2 residues within 4Å:- Chain D: T.347
- Ligands: UNX.37
Ligand excluded by PLIPUNX.37: 3 residues within 4Å:- Chain D: E.291, D.315
- Ligands: UNX.36
Ligand excluded by PLIP- 2 x D8G: 6-(2-fluorobenzyl)-2,4-dimethyl-4,6-dihydro-5H-thieno[2',3':4,5]pyrrolo[2,3-d]pyridazin-5-one(Non-covalent)
D8G.13: 11 residues within 4Å:- Chain A: F.45, L.372, Y.409, Q.412, L.413, E.416
- Chain B: F.45, L.46, Y.409, Q.412, L.413
8 PLIP interactions:3 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:F.45, A:L.413, B:L.46, B:L.413
- pi-Stacking: A:F.45, B:F.45, B:F.45, B:F.45
D8G.25: 12 residues within 4Å:- Chain C: F.45, L.372, Y.409, Q.412, L.413, E.416
- Chain D: F.45, L.46, Y.409, Q.412, L.413
- Ligands: UNX.33
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain D- Hydrophobic interactions: C:F.45, C:F.45, C:L.413, C:L.413, D:L.46, D:Y.409, D:L.413
- pi-Stacking: C:F.45, D:F.45, D:F.45
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hong, B. et al., Activator-Bound Structures of Human Pyruvate Kinase M2. to be published
- Release Date
- 2009-05-05
- Peptides
- Pyruvate kinase isozymes M1/M2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 31 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- 2 x D8G: 6-(2-fluorobenzyl)-2,4-dimethyl-4,6-dihydro-5H-thieno[2',3':4,5]pyrrolo[2,3-d]pyridazin-5-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hong, B. et al., Activator-Bound Structures of Human Pyruvate Kinase M2. to be published
- Release Date
- 2009-05-05
- Peptides
- Pyruvate kinase isozymes M1/M2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D