SMTL ID : 3h83.1

2.06 Angstrom resolution structure of a hypoxanthine-guanine phosphoribosyltransferase (hpt-1) from Bacillus anthracis str. 'Ames Ancestor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-tetramer

Ligands

3 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 7 residues within 4Å: Chain A: K.43, E.46, L.47, I.50, Y.167, V.168, G.169 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.43, A:K.43, A:V.168, A:V.168 Water bridges: A:D.166 GLC-FRU.2: 8 residues within 4Å: Chain A: I.125, F.176, V.177, L.182, D.183, Y.184, K.185 Ligands: PO4.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.185, A:V.177, A:V.177, A:D.183 Water bridges: A:D.183, A:D.183, A:D.183, A:D.183, A:K.185, A:R.189, A:D.124, A:G.181, A:D.183 GLC-FRU.3: 5 residues within 4Å: Chain B: V.177, L.182, D.183, K.185 Ligands: PO4.8 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.185, B:V.177, B:V.177, B:D.183, B:D.183, B:R.189 Water bridges: B:R.189

10 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: I.126, D.127, S.128, G.129 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.127, A:S.128, A:S.128, A:S.128, A:G.129 Water bridges: A:L.130, A:T.131 PO4.5: 6 residues within 4Å: Chain A: L.66, K.67, G.68, D.183, R.189 Ligands: GLC-FRU.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.67, A:G.68 Water bridges: A:L.66, A:A.69, A:D.124, A:R.189, A:R.189 Salt bridges: A:R.189 PO4.6: 7 residues within 4Å: Chain A: Q.41, D.75, K.78, R.79 Chain B: Q.41, D.75, K.78 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.41, B:D.75, A:Q.41, A:R.79 Water bridges: B:K.78, B:K.78, B:K.78, A:D.75 Salt bridges: B:K.78, A:K.78 PO4.7: 4 residues within 4Å: Chain B: I.126, D.127, S.128, G.129 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.127, B:S.128, B:G.129 Water bridges: B:I.125, B:L.130 PO4.8: 7 residues within 4Å: Chain B: L.66, K.67, G.68, D.183, R.189 Ligands: GLC-FRU.3, GLC-FRU.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.67, B:G.68 Water bridges: B:L.66, B:A.69 Salt bridges: B:R.189 PO4.9: 4 residues within 4Å: Chain C: I.126, D.127, S.128, G.129 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.127, C:S.128, C:G.129 Water bridges: C:L.130 PO4.10: 5 residues within 4Å: Chain C: L.66, K.67, G.68, D.183, R.189 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.67, C:G.68 Water bridges: C:A.69, C:R.189 Salt bridges: C:R.189 PO4.11: 4 residues within 4Å: Chain D: I.126, D.127, S.128, G.129 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.127, D:S.128, D:S.128, D:G.129, D:L.130 Water bridges: D:D.127, D:T.131 PO4.12: 5 residues within 4Å: Chain D: L.66, K.67, G.68, D.183, R.189 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:K.67, D:G.68 Water bridges: D:A.69, D:R.189 Salt bridges: D:R.189 PO4.13: 6 residues within 4Å: Chain C: Q.41, D.75, K.78 Chain D: Q.41, K.78, R.79 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:Q.41, D:R.79, C:Q.41, C:D.75 Salt bridges: D:K.78, C:K.78 Water bridges: C:R.79, C:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., 2.06 Angstrom resolution structure of a hypoxanthine-guanine phosphoribosyltransferase (hpt-1) from Bacillus anthracis str. 'Ames Ancestor. To be Published

Release Date

2009-05-12

Peptides

Hypoxanthine phosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hypoxanthine phosphoribosyltransferase

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