SMTL ID : 3h86.1 (2 other biounits)

Crystal structure of adenylate kinase from Methanococcus maripaludis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

3 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Covalent)(Non-covalent)

AP5.1: 26 residues within 4Å: Chain A: P.12, G.13, V.14, G.15, G.16, T.17, T.18, F.39, G.40, M.43, R.56, R.60, Q.71, T.91, H.92, V.95, G.104, R.131, D.135, R.138, R.140, N.175, K.176, N.177, G.178, V.180 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.13, A:G.15, A:G.16, A:T.17, A:T.17, A:T.17, A:T.18, A:R.56, A:R.56, A:Q.71, A:T.91, A:T.91, A:H.92, A:D.135, A:N.175, A:K.176, A:G.178 Salt bridges: A:H.92, A:H.92, A:R.138, A:R.138, A:R.138, A:R.140, A:R.140 pi-Cation interactions: A:R.131 AP5.2: 29 residues within 4Å: Chain B: P.12, G.13, V.14, G.15, G.16, T.17, T.18, N.38, F.39, G.40, M.43, R.56, D.57, R.60, Q.71, T.91, H.92, V.95, G.104, R.131, S.134, D.135, R.138, R.140, N.175, K.176, N.177, G.178, V.180 29 PLIP interactions: 29 interactions with chain B Hydrogen bonds: B:G.13, B:G.15, B:G.15, B:G.16, B:T.17, B:T.17, B:T.18, B:T.18, B:N.38, B:D.57, B:T.91, B:T.91, B:R.131, B:D.135, B:R.140, B:N.175, B:K.176, B:N.177, B:G.178 Salt bridges: B:R.56, B:R.56, B:H.92, B:R.138, B:R.138, B:R.138, B:R.140, B:R.140 pi-Cation interactions: B:R.131, B:R.131 AP5.3: 24 residues within 4Å: Chain C: P.12, G.13, V.14, G.15, G.16, T.17, T.18, F.39, G.40, M.43, R.56, D.57, M.59, R.60, Q.71, T.91, H.92, V.95, G.104, R.131, D.135, R.138, R.140, V.180 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:G.13, C:G.13, C:G.15, C:G.15, C:G.16, C:T.17, C:T.17, C:T.18, C:R.60, C:Q.71, C:T.91, C:T.91, C:D.135, C:R.140 Salt bridges: C:H.92, C:H.92, C:H.92, C:R.138, C:R.138, C:R.138, C:R.140, C:R.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davlieva, M. et al., Crystal structure of a trimeric archaeal adenylate kinase from the mesophile Methanococcus maripaludis with an unusually broad functional range and thermal stability. Proteins (2009)

Release Date

2009-10-06

Peptides

Adenylate kinase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

Adenylate kinase

Related Entries With Identical Sequence