- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 7 residues within 4Å:- Chain A: D.272, K.279, D.349, E.351
- Ligands: ZN.1, BCT.4, BES.5
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.272, A:D.349, A:D.349, A:E.351
MN.7: 7 residues within 4Å:- Chain B: D.272, K.279, D.349, E.351
- Ligands: ZN.6, BCT.9, BES.10
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.272, B:D.349, B:D.349, B:E.351
MN.12: 7 residues within 4Å:- Chain C: D.272, K.279, D.349, E.351
- Ligands: ZN.11, BCT.14, BES.15
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.272, C:D.349, C:D.349, C:E.351
MN.17: 6 residues within 4Å:- Chain D: D.272, K.279, D.349, E.351
- Ligands: ZN.16, BES.20
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.272, D:D.349, D:D.349, D:E.351
MN.22: 7 residues within 4Å:- Chain E: D.272, K.279, D.349, E.351
- Ligands: ZN.21, BCT.24, BES.25
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.272, E:D.349, E:D.349, E:E.351
MN.27: 7 residues within 4Å:- Chain F: D.272, K.279, D.349, E.351
- Ligands: ZN.26, BCT.29, BES.30
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.272, F:D.349, F:D.349, F:E.351
- 6 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: L.189, G.190, L.192, C.197, K.288, M.291
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:L.189, A:G.190, A:L.192, A:K.288, H2O.1
K.8: 6 residues within 4Å:- Chain B: L.189, G.190, L.192, C.197, K.288, M.291
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.189, B:G.190, B:L.192, B:K.288, H2O.21
K.13: 6 residues within 4Å:- Chain C: L.189, G.190, L.192, C.197, K.288, M.291
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:L.189, C:G.190, C:L.192, C:K.288, H2O.40
K.18: 6 residues within 4Å:- Chain D: L.189, G.190, L.192, C.197, K.288, M.291
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:L.189, D:G.190, D:L.192, D:K.288, H2O.59
K.23: 6 residues within 4Å:- Chain E: L.189, G.190, L.192, C.197, K.288, M.291
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:L.189, E:G.190, E:L.192, E:K.288, H2O.78
K.28: 6 residues within 4Å:- Chain F: L.189, G.190, L.192, C.197, K.288, M.291
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:L.189, F:G.190, F:L.192, F:K.288, H2O.96
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.4: 10 residues within 4Å:- Chain A: K.267, D.349, A.350, E.351, G.352, R.353, L.377
- Ligands: ZN.1, MN.2, BES.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.351, A:G.352, A:R.353, A:R.353, A:R.353
BCT.9: 10 residues within 4Å:- Chain B: K.267, D.349, A.350, E.351, G.352, R.353, L.377
- Ligands: ZN.6, MN.7, BES.10
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.267, B:D.349, B:E.351, B:G.352, B:R.353
BCT.14: 10 residues within 4Å:- Chain C: K.267, D.349, A.350, E.351, G.352, R.353, L.377
- Ligands: ZN.11, MN.12, BES.15
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.349, C:R.353, C:R.353
BCT.19: 9 residues within 4Å:- Chain D: K.267, D.349, A.350, E.351, G.352, R.353, L.377
- Ligands: ZN.16, BES.20
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.351, D:G.352, D:R.353, D:L.377
BCT.24: 10 residues within 4Å:- Chain E: K.267, D.349, A.350, E.351, G.352, R.353, L.377
- Ligands: ZN.21, MN.22, BES.25
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.349, E:R.353, E:R.353
BCT.29: 10 residues within 4Å:- Chain F: K.267, D.349, A.350, E.351, G.352, R.353, L.377
- Ligands: ZN.26, MN.27, BES.30
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:E.351, F:G.352, F:R.353, F:R.353, F:R.353
- 6 x BES: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID(Non-covalent)
BES.5: 20 residues within 4Å:- Chain A: K.267, D.272, K.279, M.287, D.290, N.347, D.349, E.351, R.353, T.376, L.377, T.378, G.379, I.382, I.437, A.466, W.470
- Ligands: ZN.1, MN.2, BCT.4
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:I.382, A:I.437, A:A.466, A:W.470
- Hydrogen bonds: A:K.279, A:L.377, A:G.379
BES.10: 20 residues within 4Å:- Chain B: K.267, D.272, K.279, M.287, D.290, N.347, D.349, E.351, R.353, T.376, L.377, T.378, G.379, I.382, I.437, A.466, W.470
- Ligands: ZN.6, MN.7, BCT.9
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:I.382, B:I.437, B:A.466, B:W.470
- Hydrogen bonds: B:K.279, B:T.376, B:L.377, B:G.379
BES.15: 20 residues within 4Å:- Chain C: K.267, D.272, K.279, M.287, D.290, N.347, D.349, E.351, R.353, T.376, L.377, T.378, G.379, I.382, I.437, A.466, W.470
- Ligands: ZN.11, MN.12, BCT.14
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:I.382, C:I.437, C:A.466, C:W.470
- Hydrogen bonds: C:K.279, C:T.376, C:L.377, C:G.379
BES.20: 20 residues within 4Å:- Chain D: K.267, D.272, K.279, M.287, D.290, N.347, D.349, E.351, R.353, T.376, L.377, T.378, G.379, I.382, I.437, A.466, W.470
- Ligands: ZN.16, MN.17, BCT.19
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:I.382, D:I.437, D:A.466, D:W.470
- Hydrogen bonds: D:K.279, D:L.377, D:G.379
- Water bridges: D:A.380
BES.25: 20 residues within 4Å:- Chain E: K.267, D.272, K.279, M.287, D.290, N.347, D.349, E.351, R.353, T.376, L.377, T.378, G.379, I.382, I.437, A.466, W.470
- Ligands: ZN.21, MN.22, BCT.24
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:I.382, E:I.437, E:A.466, E:W.470
- Hydrogen bonds: E:K.279, E:L.377, E:G.379
- Water bridges: E:A.380
BES.30: 20 residues within 4Å:- Chain F: K.267, D.272, K.279, M.287, D.290, N.347, D.349, E.351, R.353, T.376, L.377, T.378, G.379, I.382, I.437, A.466, W.470
- Ligands: ZN.26, MN.27, BCT.29
8 PLIP interactions:8 interactions with chain F- Hydrophobic interactions: F:I.382, F:I.437, F:A.466, F:W.470
- Hydrogen bonds: F:K.279, F:T.376, F:L.377, F:G.379
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kale, A. et al., Crystal structure of the leucine aminopeptidase from Pseudomonas putida reveals the molecular basis for its enantioselectivity and broad substrate specificity. J.Mol.Biol. (2010)
- Release Date
- 2010-04-14
- Peptides
- Cytosol aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
AC
BD
CE
DF
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 6 x K: POTASSIUM ION(Non-covalent)
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
- 6 x BES: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kale, A. et al., Crystal structure of the leucine aminopeptidase from Pseudomonas putida reveals the molecular basis for its enantioselectivity and broad substrate specificity. J.Mol.Biol. (2010)
- Release Date
- 2010-04-14
- Peptides
- Cytosol aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
AC
BD
CE
DF
E