SMTL ID : 3h8v.1

Human Ubiquitin-activating Enzyme 5 in Complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.189, C.192, C.266, C.271 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.189, A:C.192, A:C.266, A:C.271 ZN.3: 4 residues within 4Å: Chain B: C.189, C.192, C.266, C.271 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.189, B:C.192, B:C.266, B:C.271

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 17 residues within 4Å: Chain A: G.43, G.45, G.46, V.47, D.67, Y.68, D.69, K.90, N.113, I.114, T.115, C.144, V.145, D.146, N.147, A.150, M.221 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.45, A:G.46, A:V.47, A:Y.68, A:N.113, A:I.114, A:D.146, A:D.146, A:N.147 Water bridges: A:G.45, A:A.150, A:A.150 Salt bridges: A:K.90, A:K.90, A:K.90 pi-Stacking: A:Y.68, A:Y.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacik, J.P. et al., Crystal structure of the human ubiquitin-activating enzyme 5 (UBA5) bound to ATP: mechanistic insights into a minimalistic E1 enzyme. J.Biol.Chem. (2010)

Release Date

2009-05-26

Peptides

Ubiquitin-like modifier-activating enzyme 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-like modifier-activating enzyme 5

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