SMTL ID : 3haq.1

Crystal structure of bacteriorhodopsin mutant I148A crystallized from bicelles

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x RET: RETINAL(Covalent)

RET.1: 17 residues within 4Å: Chain A: Y.83, W.86, T.89, T.90, L.93, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.83, A:W.86, A:T.90, A:L.93, A:M.145, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:A.215, A:K.216

1 x HP6: HEPTANE(Non-functional Binders)

HP6.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x DD9: nonane(Non-covalent)(Non-functional Binders)

DD9.3: 2 residues within 4Å: Chain A: W.137, I.140 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.137, A:W.137, A:I.140 DD9.4: 1 residues within 4Å: Chain A: A.139 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.139 DD9.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x D12: DODECANE(Non-covalent)

D12.5: 3 residues within 4Å: Chain A: A.110, G.113, A.114 No protein-ligand interaction detected (PLIP) D12.7: 1 residues within 4Å: Chain A: A.44 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.44

1 x D10: DECANE(Non-covalent)

D10.8: 2 residues within 4Å: Chain A: V.136, I.140 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.136, A:I.140, A:I.140

1 x R16: HEXADECANE(Non-covalent)

R16.9: 3 residues within 4Å: Chain A: L.146, Y.150, F.153 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.150, A:F.153

1 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.10: 4 residues within 4Å: Chain A: G.6, W.10, L.61, L.62 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.10, A:W.10, A:W.10, A:L.62 Water bridges: A:L.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joh, N.H. et al., Similar energetic contributions of packing in the core of membrane and water-soluble proteins. J.Am.Chem.Soc. (2009)

Release Date

2009-09-22

Peptides

Bacteriorhodopsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin