SMTL ID : 3hc1.1

Crystal structure of HDOD domain protein with unknown function (NP_953345.1) from GEOBACTER SULFURREDUCENS at 1.90 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: D.153, H.193, H.217, H.218, E.249 Ligands: FE.2 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:H.193, A:H.217, A:H.218, A:E.249, H2O.1 FE.2: 6 residues within 4Å: Chain A: H.122, H.152, D.153, D.238, E.249 Ligands: FE.1 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.122, A:H.152, A:D.153, A:D.238, A:E.249, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.17, F.198, A.199 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.4: 1 residues within 4Å: Chain A: L.305 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: D.57, V.59, L.60, R.63, D.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.60, A:R.63 GOL.6: 3 residues within 4Å: Chain A: R.63, K.108, F.303 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.63 GOL.7: 6 residues within 4Å: Chain A: L.72, Y.73, L.93, E.96, K.131, E.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.73, A:K.131, A:E.135 GOL.8: 7 residues within 4Å: Chain A: P.27, T.28, V.29, P.30, D.105, L.106, T.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.28, A:T.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of HDOD domain protein with unknown function (NP_953345.1) from GEOBACTER SULFURREDUCENS at 1.90 A resolution. To be published

Release Date

2009-06-02

Peptides

uncharacterized HDOD domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

uncharacterized HDOD domain protein