SMTL ID : 3hch.2 (1 other biounit)

Structure of the C-terminal domain (MsrB) of Neisseria meningitidis PilB (complex with substrate)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x RSM: (2S)-2-(acetylamino)-N-methyl-4-[(R)-methylsulfinyl]butanamide(Non-covalent)

RSM.1: 9 residues within 4Å: Chain A: T.27, W.66, R.90, G.103, H.104, F.106, S.119, N.121 Ligands: P6G.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.90, A:H.104 Water bridges: A:R.117, A:N.121 pi-Cation interactions: A:W.66, A:W.66

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 4 residues within 4Å: Chain A: A.75, V.78, T.79, E.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.75, A:E.80, A:E.80, A:E.80

4 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.3: 7 residues within 4Å: Chain A: T.13, Q.18, V.47, G.50, K.126, A.136, Y.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.13, A:Q.18, A:K.126 P6G.4: 3 residues within 4Å: Chain A: F.39, K.40, P.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.40 P6G.5: 8 residues within 4Å: Chain A: R.89, T.91, V.105, F.106, P.107, D.108, R.117 Ligands: RSM.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.89, A:R.89, A:T.91, A:R.117 Water bridges: A:T.91 P6G.6: 3 residues within 4Å: Chain A: S.62, D.108, R.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ranaivoson, F.M. et al., Methionine sulfoxide reductase B displays a high level of flexibility. J.Mol.Biol. (2009)

Release Date

2009-10-13

Peptides

Peptide methionine sulfoxide reductase msrA/msrB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptide methionine sulfoxide reductase msrA/msrB

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