SMTL ID : 3hcs.1

Crystal structure of the N-terminal domain of TRAF6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.21, C.24, C.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:C.41, A:C.44 ZN.2: 6 residues within 4Å: Chain A: T.34, C.36, H.38, C.56, V.58, D.59 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.36, A:H.38, A:C.56, A:D.59, A:D.59 ZN.3: 5 residues within 4Å: Chain A: C.85, N.87, C.90, H.102, C.106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.85, A:C.90, A:H.102, A:C.106 ZN.4: 4 residues within 4Å: Chain A: C.113, C.116, H.128, C.133 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.113, A:C.116, A:H.128, A:C.133 ZN.5: 4 residues within 4Å: Chain A: C.140, C.143, H.155, C.159 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.140, A:C.143, A:H.155, A:C.159 ZN.6: 4 residues within 4Å: Chain B: C.21, C.24, C.41, C.44 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.21, B:C.24, B:C.41, B:C.44 ZN.7: 4 residues within 4Å: Chain B: C.36, H.38, C.56, D.59 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.36, B:H.38, B:C.56, B:D.59, B:D.59 ZN.8: 4 residues within 4Å: Chain B: C.85, C.90, H.102, C.106 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.85, B:C.90, B:H.102, B:C.106 ZN.9: 4 residues within 4Å: Chain B: C.113, C.116, H.128, C.133 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.113, B:C.116, B:H.128, B:C.133 ZN.10: 5 residues within 4Å: Chain B: C.140, C.143, H.155, C.159, P.160 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.140, B:C.143, B:H.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, Q. et al., E2 interaction and dimerization in the crystal structure of TRAF6. Nat.Struct.Mol.Biol. (2009)

Release Date

2009-05-26

Peptides

TNF receptor-associated factor 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TNF receptor-associated factor 6