SMTL ID : 3hdf.1 (1 other biounit)

Crystal structure of truncated endolysin R21 from phage 21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 3 residues within 4Å: Chain A: K.43, A.44, K.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.47, A:K.47 Water bridges: A:A.44

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: I.15, P.16, Y.17, W.24 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.18 GOL.3: 5 residues within 4Å: Chain A: I.61, Y.64, A.86, S.92, L.95 No protein-ligand interaction detected (PLIP) GOL.4: 1 residues within 4Å: Chain A: F.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.88 Water bridges: A:N.88, A:F.89 GOL.5: 4 residues within 4Å: Chain A: T.93, K.97, Q.109, R.112 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.93, A:K.97, A:K.97, A:Q.109 GOL.6: 6 residues within 4Å: Chain A: F.80, R.90, Q.109, L.110, W.113, R.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.90, A:R.90, A:Q.109, A:R.127, A:R.127 GOL.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Q. et al., Regulation of a muralytic enzyme by dynamic membrane topology. Nat.Struct.Mol.Biol. (2009)

Release Date

2009-11-03

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme

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